1L1L Oxidoreductase date Feb 18, 2002
title Crystal Structure Of B-12 Dependent (Class II) Ribonucleotide Reductase
authors M.D.Sintchak, G.Arjara, B.A.Kellogg, J.Stubbe, C.L.Drennan
compound source
Molecule: Ribonucleoside Triphosphate Reductase
Chain: A, B, C, D
Ec: 1.17.4.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Lactobacillus Leichmannii
Organism_taxid: 28039
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm105
Expression_system_vector_type: Plasmid
Expression_system_vector: Psquire
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.500 114.700 121.300 90.00 110.20 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand
enzyme Oxidoreductase E.C.1.17.4.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe crystal structure of class II ribonucleotide reductase reveals how an allosterically regulated monomer mimics a dimer., Sintchak MD, Arjara G, Kellogg BA, Stubbe J, Drennan CL, Nat Struct Biol 2002 Apr;9(4):293-300. PMID:11875520
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (510 Kb) [Save to disk]
  • Biological Unit Coordinates (1l1l.pdb1.gz) 129 Kb
  • Biological Unit Coordinates (1l1l.pdb2.gz) 136 Kb
  • Biological Unit Coordinates (1l1l.pdb3.gz) 131 Kb
  • Biological Unit Coordinates (1l1l.pdb4.gz) 128 Kb
  • CSU: Contacts of Structural Units for 1L1L
  • Likely Quarternary Molecular Structure file(s) for 1L1L
  • Retrieve 1L1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L1L from S2C, [Save to disk]
  • View 1L1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L1L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L1L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l1la_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1l1lb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1l1lc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1l1ld_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l1l_B] [1l1l_A] [1l1l_D] [1l1l_C] [1l1l]
  • SWISS-PROT database: [Q59490]
  • Domain organization of [RTPR_LACLE] by SWISSPFAM
  • Other resources with information on 1L1L
  • Community annotation for 1L1L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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