1NSL Transferase date Jan 27, 2003
title Crystal Structure Of Probable Acetyltransferase
authors J.S.Brunzelle, S.V.Korolev, R.Wu, A.Joachimiak, W.F.Anderson, Mid Center For Structural Genomics (Mcsg)
compound source
Molecule: Probable Acetyltransferase
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Ydaf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.256 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.339 134.185 91.062 90.00 104.08 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CL, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of Bacillus subtilis YdaF protein: A putative ribosomal N-acetyltransferase., Brunzelle JS, Wu R, Korolev SV, Collart FR, Joachimiak A, Anderson WF, Proteins 2004 Oct 1;57(4):850-853. PMID:15468321
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (1nsl.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 1NSL
  • CSU: Contacts of Structural Units for 1NSL
  • Likely Quarternary Molecular Structure file(s) for 1NSL
  • Structure Factors (349 Kb)
  • Retrieve 1NSL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NSL from S2C, [Save to disk]
  • Re-refined 1nsl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NSL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NSL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NSL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nsla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nslb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nslc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1nsld_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1nsle_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1nslf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nsl_B] [1nsl_A] [1nsl] [1nsl_F] [1nsl_C] [1nsl_D] [1nsl_E]
  • SWISS-PROT database: [P96579]
  • Domain organization of [YDAF_BACSU] by SWISSPFAM
    • Other resources with information on 1NSL
  • Community annotation for 1NSL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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