1U60 Hydrolase date Jul 28, 2004
title Mcsg Apc5046 Probable Glutaminase Ybas
authors C.Chang, M.E.Cuff, A.Joachimiak, A.Savchenko, A.Edwards, T.Skarin Center For Structural Genomics (Mcsg)
compound source
Molecule: Probable Glutaminase Ybas
Chain: A, B, C, D
Ec: 3.5.1.2
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Ybas
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.143 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.509 155.891 164.171 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.61 Å
ligand EDO, FMT enzyme Hydrolase E.C.3.5.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceFunctional and structural characterization of four glutaminases from Escherichia coli and Bacillus subtilis., Brown G, Singer A, Proudfoot M, Skarina T, Kim Y, Chang C, Dementieva I, Kuznetsova E, Gonzalez CF, Joachimiak A, Savchenko A, Yakunin AF, Biochemistry. 2008 May 27;47(21):5724-35. Epub 2008 May 6. PMID:18459799
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (1u60.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (1u60.pdb2.gz) 103 Kb
  • Biological Unit Coordinates (1u60.pdb3.gz) 205 Kb
  • Biological Unit Coordinates (1u60.pdb4.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 1U60
  • CSU: Contacts of Structural Units for 1U60
  • Likely Quarternary Molecular Structure file(s) for 1U60
  • Structure Factors (1003 Kb)
  • Retrieve 1U60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U60 from S2C, [Save to disk]
  • Re-refined 1u60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1U60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U60
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U60, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u60a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1u60b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1u60c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1u60d_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u60_C] [1u60_A] [1u60_D] [1u60_B] [1u60]
  • SWISS-PROT database: [P77454]
  • Domain organization of [GLSA1_ECOLI] by SWISSPFAM
    • Other resources with information on 1U60
  • Community annotation for 1U60 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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