1WM1	Hydrolase	date	Jul 01, 2004
title	Crystal Structure Of Prolyl Aminopeptidase, Complex With Pro
authors	Y.Nakajima, T.Inoue, K.Ito, T.Tozaka, S.Hatakeyama, N.Tanaka, K.T. T.Yoshimoto
compound		source
Molecule: Proline Iminopeptidase Chain: A Synonym: Pip, Prolyl Aminopeptidase, Pap Ec: 3.4.11.5 Engineered: Yes		Organism_scientific: Serratia Marcescens Organism_taxid: 615 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Puc19
symmetry	Space Group: P 43 21 2	R_factor 0.200 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.445 65.445 169.071 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	PTB BindingDB	enzyme	Hydrolase E.C.3.4.11.5 BRENDA
related structures	by homologous chain: 1QTR
Gene Ontology	Chain Function Process Component A
Primary reference	Novel inhibitor for prolyl aminopeptidase from Serratia marcescens and studies on the mechanism of substrate recognition of the enzyme using the inhibitor., Inoue T, Ito K, Tozaka T, Hatakeyama S, Tanaka N, Nakamura KT, Yoshimoto T, Arch Biochem Biophys 2003 Aug 15;416(2):147-54. PMID:12893291

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1wm1.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 1WM1 CSU: Contacts of Structural Units for 1WM1 Likely Quarternary Molecular Structure file(s) for 1WM1 Structure Factors (180 Kb) Retrieve 1WM1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WM1 from S2C, [Save to disk] Re-refined 1wm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WM1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WM1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WM1, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1wm1a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wm1] [1wm1_A] SWISS-PROT database: [O32449] Domain organization of [PIP_SERMA] by SWISSPFAM

Other resources with information on 1WM1

Community annotation for 1WM1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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