2FZ3	Immune System	date	Feb 09, 2006
title	The Role Of T Cell Receptor Alpha Genes In Directing Human M Restriction
authors	J.J.Miles, N.A.Borg
compound		source
Molecule: Hla Class I Histocompatibility Antigen, B-35 Alph Chain: A Synonym: Hla-B3508 Heavy Chain, Mhc Class I Antigen B35 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
Molecule: Beta-2-Microglobulin Chain: B Synonym: B2m Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
Molecule: 11-Mer Peptide From Epstein-Barr Nuclear Antigen Chain: C Synonym: Ebna-1 Engineered: Yes		Synthetic: Yes Other_details: Synthetic Peptide
symmetry	Space Group: P 21 21 21	R_factor 0.232 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.155 82.095 109.894 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	TCRalpha genes direct MHC restriction in the potent human T cell response to a class I-bound viral epitope., Miles JJ, Borg NA, Brennan RM, Tynan FE, Kjer-Nielsen L, Silins SL, Bell MJ, Burrows JM, McCluskey J, Rossjohn J, Burrows SR, J Immunol. 2006 Nov 15;177(10):6804-14. PMID:17082594

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (2fz3.pdb1.gz) 68 Kb CSU: Contacts of Structural Units for 2FZ3 Structure Factors (277 Kb) Retrieve 2FZ3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FZ3 from S2C, [Save to disk] Re-refined 2fz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FZ3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FZ3

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FZ3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fz3_A] [2fz3] [2fz3_B] [2fz3_C] SWISS-PROT database: [P30685] [P61769] [P03211] Domain organization of [1B35_HUMAN] [B2MG_HUMAN] [EBNA1_EBVB9] by SWISSPFAM Domain found in 2FZ3: [IGc1 ] by SMART

Other resources with information on 2FZ3

Community annotation for 2FZ3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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