2NYX Transcription date Nov 21, 2006
title Crystal Structure Of Rv1404 From Mycobacterium Tuberculosis
authors M.Yu, E.H.Bursey, R.Radhakannan, C.Y.Kim, T.Kaviratne, T.Woodruf B.W.Segelke, T.Lekin, D.Toppani, T.C.Terwilliger, L.W.Hung, Tb Structural Genomics Consortium (Tbsgc), Integrated Center Fo Structure And Function Innovation (Isfi)
compound source
Molecule: Probable Transcriptional Regulatory Protein, Rv14
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Gene: Rv1404
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.262 54.747 227.505 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (2nyx.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (2nyx.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2NYX
  • CSU: Contacts of Structural Units for 2NYX
  • Likely Quarternary Molecular Structure file(s) for 2NYX
  • Structure Factors (134 Kb)
  • Retrieve 2NYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NYX from S2C, [Save to disk]
  • Re-refined 2nyx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2NYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NYX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NYX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nyx_C] [2nyx_D] [2nyx_B] [2nyx_A] [2nyx]
  • SWISS-PROT database: [P71672]
  • Domain organization of [P71672_MYCTU] by SWISSPFAM
  • Domain found in 2NYX: [HTH_MARR ] by SMART
    • Other resources with information on 2NYX
  • Community annotation for 2NYX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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