4V60 The structure of rat liver vault at 3.5 angstrom resolution date
authors Kato, K., Zhou, Y., Tanaka, H., Yao, M., Yamashita, E., Yoshimura, M., Tsukihara, T.
compound source
symmetry
R_factor
R_Free 0.3304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
note 4V60 supersedes 2ZUO, 2ZV4, 2ZV5
Gene
Ontology
ChainFunctionProcessComponent
S, a, T, N, K, d, Y, E, j, Z, k, g, e, J, W, B, H, c, b, D, I, G, U, F, V, Q, h, M, C, L, f, i, A, O, X, P, m, l, R


Primary referenceThe structure of rat liver vault at 3.5 angstrom resolution., Tanaka H, Kato K, Yamashita E, Sumizawa T, Zhou Y, Yao M, Iwasaki K, Yoshimura M, Tsukihara T, Science. 2009 Jan 16;323(5912):384-8. PMID:19150846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1840 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V60
  • Structure Factors (41626 Kb)
  • Retrieve 4V60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V60 from S2C, [Save to disk]
    • View 4V60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V60
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v60_B] [4v60_j] [4v60_f] [4v60_T] [4v60_i] [4v60_d] [4v60_F] [4v60_C] [4v60_D] [4v60_J] [4v60_Q] [4v60_M] [4v60_k] [4v60_I] [4v60_b] [4v60_E] [4v60_O] [4v60_l] [4v60_Z] [4v60_S] [4v60_A] [4v60_N] [4v60_W] [4v60_L] [4v60_H] [4v60_R] [4v60_Y] [4v60_c] [4v60] [4v60_X] [4v60_G] [4v60_K] [4v60_a] [4v60_e] [4v60_P] [4v60_h] [4v60_V] [4v60_U] [4v60_g] [4v60_m]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4V60
  • Community annotation for 4V60 at PDBWiki (http://pdbwiki.org)

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