3ANS Hydrolase Hydrolase Inhibitor date Sep 08, 2010
title Human Soluble Epoxide Hydrolase In Complex With A Synthetic
authors N.Chiyo, T.Ishii, S.Hourai, K.Yanagi
compound source
Molecule: Epoxide Hydrolase 2
Chain: A, B
Fragment: Hydrolase Domain, Unp Residues 230-555
Synonym: Soluble Epoxide Hydrolase, Seh, Epoxide Hydratase, Epoxide Hydrolase, Ceh;
Ec: 3.3.2.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephx2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.219 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.630 80.350 88.690 90.00 126.20 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand S38 BindingDB enzyme Hydrolase E.C.3.3.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Practical Use of Ligand Efficiency Indices Out of the Fragment-Based Approach: Ligand Efficiency-Guided Lead Identification of Soluble Epoxide Hydrolase Inhibitors., Tanaka D, Tsuda Y, Shiyama T, Nishimura T, Chiyo N, Tominaga Y, Sawada N, Mimoto T, Kusunose N, J Med Chem. 2010 Dec 30. PMID:21192659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (3ans.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 3ANS
  • CSU: Contacts of Structural Units for 3ANS
  • Structure Factors (365 Kb)
  • Retrieve 3ANS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ANS from S2C, [Save to disk]
  • Re-refined 3ans structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ANS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ANS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ANS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ans_A] [3ans_B] [3ans]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ANS
  • Community annotation for 3ANS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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