3BGR	Transferase, Hydrolase	date	Nov 27, 2007
title	Crystal Structure Of K103ny181c Mutant Hiv-1 Reverse Transc (Rt) In Complex With Tmc278 (Rilpivirine), A Non-Nucleoside Inhibitor
authors	K.Das, J.D.Bauman, A.D.Clark Jr., A.J.Shatkin, E.Arnold
compound		source
Molecule: Reverse Transcriptaseribonuclease H Chain: A Fragment: P66 Synonym: Reverse Transcriptase P66 Subunit Ec: 2.7.7.49, 2.7.7.7, 3.1.26.4 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bh10 Isolate Expression_system_vector_type: Plasmid Expression_system_plasmid: Prt52a
Molecule: P51 Rt Chain: B Fragment: P51 Synonym: Reverse Transcriptase P51 Subunit Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bh10 Isolate Expression_system_vector_type: Plasmid Expression_system_plasmid: Prt52a
symmetry	Space Group: C 1 2 1	R_factor 0.228 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 162.840 73.180 108.920 90.00 100.79 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	EDO, T27	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	High-resolution structures of HIV-1 reverse transcriptase/TMC278 complexes: strategic flexibility explains potency against resistance mutations., Das K, Bauman JD, Clark AD Jr, Frenkel YV, Lewi PJ, Shatkin AJ, Hughes SH, Arnold E, Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1466-71. Epub 2008 Jan 29. PMID:18230722

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk] Biological Unit Coordinates (3bgr.pdb1.gz) 169 Kb LPC: Ligand-Protein Contacts for 3BGR CSU: Contacts of Structural Units for 3BGR Likely Quarternary Molecular Structure file(s) for 3BGR Structure Factors (610 Kb) Retrieve 3BGR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BGR from S2C, [Save to disk] Re-refined 3bgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BGR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BGR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BGR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bgr] [3bgr_B] [3bgr_A] SWISS-PROT database: [P03366] Domain organization of [POL_HV1B1] by SWISSPFAM

Other resources with information on 3BGR

Community annotation for 3BGR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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