3CM1 Crystal structure of SsgA-like sporulation-specific cell division protein (YP_290167.1) from Thermobifida fusca YX-ER1 at 2.60 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics., Chruszcz, M., Minor, W., Wang, S.
compound source
symmetry
R_factor
R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand MSE enzyme
Gene TFU ; YP
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural and functional characterizations of SsgB, a conserved activator of developmental cell division in morphologically complex actinomycetes., Xu Q, Traag BA, Willemse J, McMullan D, Miller MD, Elsliger MA, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chruszcz M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, Minor W, Mommaas AM, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Wang S, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, van Wezel GP, J Biol Chem. 2009 Sep 11;284(37):25268-79. Epub 2009 Jun 30. PMID:19567872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3cm1.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3CM1
  • CSU: Contacts of Structural Units for 3CM1
  • Likely Quarternary Molecular Structure file(s) for 3CM1
  • Structure Factors (2202 Kb)
  • Retrieve 3CM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CM1 from S2C, [Save to disk]
  • Re-refined 3cm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CM1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CM1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cm1_C] [3cm1] [3cm1_B] [3cm1_A]
  • SWISS-PROT database: [Q47N25]
  • Domain organization of [Q47N25_THEFY] by SWISSPFAM
    • Other resources with information on 3CM1
  • Community annotation for 3CM1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science