3DLE	Transferase	date	Jun 27, 2008
title	Crystal Structure Of Hiv-1 Reverse Transcriptase In Complex With Gf128590.
authors	J.Ren, P.P.Chamberlain, D.K.Stammers
compound		source
Molecule: Reverse Transcriptaseribonuclease H Chain: A Fragment: Gag-Pol Polyprotein P66 Subunit Synonym: P66 Rt Ec: 2.7.7.49, 2.7.7.7, 3.1.26.4 Engineered: Yes		Organism_scientific: Hiv-1 M:B_hxb2r Organism_common: Hiv-1 Organism_taxid: 11706 Strain: Hxb2 Isolate Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_strain: Hxb2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk233-2
Molecule: P51 Rt Chain: B Fragment: Gag-Pol Polyprotein P51 Subunit Engineered: Yes		Organism_scientific: Hiv-1 M:B_hxb2r Organism_common: Hiv-1 Organism_taxid: 11706 Strain: Hxb2 Isolate Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_strain: Dg2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk233-2
symmetry	Space Group: P 21 21 21	R_factor 0.214 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 137.890 110.250 72.420 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CSD, GFA	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis for the improved drug resistance profile of new generation benzophenone non-nucleoside HIV-1 reverse transcriptase inhibitors., Ren J, Chamberlain PP, Stamp A, Short SA, Weaver KL, Romines KR, Hazen R, Freeman A, Ferris RG, Andrews CW, Boone L, Chan JH, Stammers DK, J Med Chem. 2008 Aug 28;51(16):5000-8. Epub 2008 Jul 30. PMID:18665583

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk] Biological Unit Coordinates (3dle.pdb1.gz) 161 Kb LPC: Ligand-Protein Contacts for 3DLE CSU: Contacts of Structural Units for 3DLE Likely Quarternary Molecular Structure file(s) for 3DLE Structure Factors (306 Kb) Retrieve 3DLE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DLE from S2C, [Save to disk] Re-refined 3dle structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DLE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

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Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DLE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dle] [3dle_A] [3dle_B] SWISS-PROT database: [P04585] Domain organization of [POL_HV1H2] by SWISSPFAM

Other resources with information on 3DLE

Community annotation for 3DLE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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