3EQE Oxidoreductase date Sep 30, 2008
title Crystal Structure Of The Yubc Protein From Bacillus Subtilis Northeast Structural Genomics Consortium Target Sr112.
authors S.M.Vorobiev, M.Su, J.Seetharaman, J.Benach, F.Forouhar, G.Clayto B.Cooper, H.Wang, E.L.Foote, C.Ciccosanti, L.Mao, R.Xiao, T.B.Act G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomic Consortium (Nesg)
compound source
Molecule: Putative Cystein Dioxygenase
Chain: A, B
Ec: 1.13.11.-
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: 168
Gene: Bsu31140, Yubc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 43 2 2
R_factor 0.241 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.830 65.830 197.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.82 Å
ligand FE, MSE enzyme Oxidoreductase E.C.1.13.11 BRENDA
note 3EQE is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3eqe.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (3eqe.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3EQE
  • CSU: Contacts of Structural Units for 3EQE
  • Likely Quarternary Molecular Structure file(s) for 3EQE
  • Structure Factors (72 Kb)
  • Retrieve 3EQE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EQE from S2C, [Save to disk]
  • Re-refined 3eqe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EQE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EQE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EQE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eqe_A] [3eqe] [3eqe_B]
  • SWISS-PROT database: [O32085]
  • Domain organization of [CDOA_BACSU] by SWISSPFAM
  • Other resources with information on 3EQE
  • Community annotation for 3EQE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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