3FUG	Transcription Transcription Regulator	date	Jan 14, 2009
title	Crystal Structure Of The Retinoid X Receptor Ligand Binding Bound To The Synthetic Agonist 3-[4-Hydroxy-3-(3,5,5,8,8-Pe 5,6,7,8-Tetrahydronaphthalen-2-Yl)-Phenyl]Acrylic Acid
authors	W.Bourguet
compound		source
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: A Fragment: Ligand Binding Domain (Residues 223-462) Synonym: Retinoid X Receptor Alpha, Nuclear Receptor Subfam Group B Member 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr2b1, Rxra Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Nuclear Receptor Coactivator 2 Chain: B Fragment: Nuclear Receptor Interaction Motif 2 (Residues 68 Synonym: Ncoa-2, Transcriptional Intermediary Factor 2, Hti Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans. Th Has Been Synthesized By Automatic Chemical Synthesis
symmetry	Space Group: P 43 21 2	R_factor 0.205 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.763 65.763 110.857 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	2E3	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Modulating Retinoid X Receptor with a Series of (E)-3-[4-Hydroxy-3-(3-alkoxy-5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphtha len-2-yl)phenyl]acrylic Acids and Their 4-Alkoxy Isomers (dagger)., Santin EP, Germain P, Quillard F, Khanwalkar H, Rodriguez-Barrios F, Gronemeyer H, de Lera AR, Bourguet W, J Med Chem. 2009 May 1. PMID:19408900

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (3fug.pdb1.gz) 38 Kb Biological Unit Coordinates (3fug.pdb2.gz) 74 Kb LPC: Ligand-Protein Contacts for 3FUG CSU: Contacts of Structural Units for 3FUG Likely Quarternary Molecular Structure file(s) for 3FUG Structure Factors (802 Kb) Retrieve 3FUG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FUG from S2C, [Save to disk] Re-refined 3fug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FUG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FUG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FUG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fug_B] [3fug_A] [3fug] SWISS-PROT database: [Q15596] [P19793] Domain organization of [NCOA2_HUMAN] [RXRA_HUMAN] by SWISSPFAM Domain found in 3FUG: [HOLI ] by SMART

Other resources with information on 3FUG

Community annotation for 3FUG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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