3FZW Isomerase date Jan 26, 2009
title Crystal Structure Of Ketosteroid Isomerase D40n-D103n From P Putida (Pksi) With Bound Equilenin
authors J.M.M.Caaveiro, D.Ringe, G.A.Petsko
compound source
Molecule: Steroid Delta-Isomerase
Chain: A, B
Synonym: Delta(5)-3-Ketosteroid Isomerase
Ec: 5.3.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Gene: Ksi
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.149 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.876 71.196 50.452 90.00 89.92 90.00
method X-Ray Diffractionresolution 1.32 Å
ligand EQU, GOL, IPA enzyme Isomerase E.C.5.3.3.1 BRENDA
note 3FZW is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHydrogen bond coupling in the ketosteroid isomerase active site., Sigala PA, Caaveiro JM, Ringe D, Petsko GA, Herschlag D, Biochemistry. 2009 Jul 28;48(29):6932-9. PMID:19469568
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3fzw.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 3FZW
  • CSU: Contacts of Structural Units for 3FZW
  • Likely Quarternary Molecular Structure file(s) for 3FZW
  • Structure Factors (523 Kb)
  • Retrieve 3FZW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FZW from S2C, [Save to disk]
  • Re-refined 3fzw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FZW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FZW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FZW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fzw] [3fzw_A] [3fzw_B]
  • SWISS-PROT database: [P07445]
  • Domain organization of [SDIS_PSEPU] by SWISSPFAM
  • Other resources with information on 3FZW
  • Community annotation for 3FZW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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