3HLY Flavoprotein date May 28, 2009
title Crystal Structure Of The Flavodoxin-Like Domain From Synecho Q5mzp6_synp6 Protein. Northeast Structural Genomics Consort Snr135d.
authors S.Vorobiev, M.Su, D.Lee, C.Ciccosanti, S.Sahdev, R.Xiao, T.B.Acton G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomic Consortium (Nesg)
compound source
Molecule: Flavodoxin-Like Domain
Chain: A, B, C
Fragment: Residues 262-414
Engineered: Yes
Organism_scientific: Synechococcus Elongatus Pcc 6301
Organism_common: Anacystis Nidulans
Organism_taxid: 269084
Strain: Atcc 27144pcc 6301saug 14021
Gene: Dfa1, Syc2284_c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) + Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 21-23c
symmetry Space Group: C 2 2 21
R_factor 0.225 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.270 97.899 118.076 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CA, MSE enzyme
Gene SYC2284 (C. caroliniana)
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3hly.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (3hly.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3hly.pdb3.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3HLY
  • CSU: Contacts of Structural Units for 3HLY
  • Likely Quarternary Molecular Structure file(s) for 3HLY
  • Structure Factors (830 Kb)
  • Retrieve 3HLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HLY from S2C, [Save to disk]
  • Re-refined 3hly structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HLY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HLY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hly_B] [3hly] [3hly_A] [3hly_C]
  • SWISS-PROT database: [Q5MZP6]
  • Domain organization of [Q5MZP6_SYNP6] by SWISSPFAM
  • Other resources with information on 3HLY
  • Community annotation for 3HLY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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