4V6I	Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome	date
authors	Armache, J.P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	8.80
note	4V6I supersedes 3IZB, 3IZE, 3IZF, 3IZS, 3IZC
Gene Ontology	Chain Function Process Component AA AB cytosolic small ribosomal su... AC cytosolic small ribosomal su... AD cytosolic small ribosomal su... AE AF cytosolic small ribosomal su... AH cytosolic small ribosomal su... AI AJ cytosolic small ribosomal su... AK AL AM AN cytosolic small ribosomal su... AO cytosolic small ribosomal su... AP cytosolic small ribosomal su... AQ AR AS cytosolic small ribosomal su... AT cytosolic small ribosomal su... AU AV cytosolic small ribosomal su... AX cytosolic small ribosomal su... AY cytosolic small ribosomal su... AZ Aa GDP-dissociation inhibitor a... BA cytosolic large ribosomal su... BB BC cytosolic large ribosomal su... BD cytosolic large ribosomal su... BE cytosolic large ribosomal su... BF BG BH cytosolic large ribosomal su... BI cytosolic large ribosomal su... BJ cytosolic large ribosomal su... BK cytosolic large ribosomal su... BM cytosolic large ribosomal su... BN cytosolic large ribosomal su... BO cytosolic large ribosomal su... BP BQ cytosolic large ribosomal su... BR cytosolic large ribosomal su... BS BT cytosolic large ribosomal su... BU cytosolic large ribosomal su... BV BW BX cytosolic large ribosomal su... BY BZ cytosolic large ribosomal su... Ba cytosolic large ribosomal su... Bc cytosolic large ribosomal su... Bd Be Bf cytosolic large ribosomal su... Bg Bh cytosolic large ribosomal su... Bi preribosome, large subunit p... Bj Bk Bl cytosolic large ribosomal su... Bm cytosolic large ribosomal su... Bn cytosolic large ribosomal su... Bo cytosolic large ribosomal su... Bp Bq Br cytosolic large ribosomal su... Bs Bu, Bt protein kinase activator act... Bv, Bw protein kinase activator act...
Primary reference	Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution., Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soding J, Westhof E, Wilson DN, Beckmann R, Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19748-53. Epub 2010 Oct 27. PMID:20980660

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1191 Kb) [Save to disk] CSU: Contacts of Structural Units for 4V6I Retrieve 4V6I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V6I from S2C, [Save to disk]

View 4V6I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V6I

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v6i_Bx] [4v6i_AV] [4v6i_Bg] [4v6i_AR] [4v6i_Bl] [4v6i_BV] [4v6i_DB] [4v6i_Bf] [4v6i_AX] [4v6i_Bv] [4v6i_Ab] [4v6i_AK] [4v6i_AD] [4v6i_BM] [4v6i_Bu] [4v6i_AG] [4v6i_Bq] [4v6i_AH] [4v6i_BL] [4v6i_BN] [4v6i_BQ] [4v6i_AC] [4v6i_BC] [4v6i_BW] [4v6i_Be] [4v6i_AW] [4v6i_BA] [4v6i_Aa] [4v6i_Bk] [4v6i_CA] [4v6i_AM] [4v6i_Bp] [4v6i_BT] [4v6i_BZ] [4v6i_BO] [4v6i_Bj] [4v6i_DC] [4v6i_BD] [4v6i_AF] [4v6i_AI] [4v6i_BR] [4v6i_Bc] [4v6i_AA] [4v6i_AQ] [4v6i_AY] [4v6i_CC] [4v6i_Bz] [4v6i] [4v6i_BX] [4v6i_AL] [4v6i_Bn] [4v6i_Ac] [4v6i_Br] [4v6i_BK] [4v6i_AE] [4v6i_DA] [4v6i_By] [4v6i_BG] [4v6i_AN] [4v6i_BP] [4v6i_BH] [4v6i_Bs] [4v6i_AO] [4v6i_BF] [4v6i_Bd] [4v6i_AB] [4v6i_BU] [4v6i_Bi] [4v6i_AP] [4v6i_AU] [4v6i_AS] [4v6i_BE] [4v6i_BJ] [4v6i_AJ] [4v6i_BY] [4v6i_AZ] [4v6i_AT] [4v6i_Bo] [4v6i_Bm] [4v6i_CB] [4v6i_Bt] [4v6i_Bh] [4v6i_BS] [4v6i_Bw] [4v6i_Ba] [4v6i_BI] [4v6i_BB] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4V6I: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S4] [S4] [WD40 ] by SMART

Other resources with information on 4V6I

Community annotation for 4V6I at PDBWiki (http://pdbwiki.org)

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