3KXS Viral Protein date Dec 03, 2009
title Crystal Structure Of Hbv Capsid Mutant Dimer (Oxy Form), Str
authors C.Packianathan, S.P.Katen, A.Zlotnick
compound source
Molecule: Capsid Protein
Chain: F, E, C, D, A, B
Fragment: Assembly Domain Residues 1 To 149
Synonym: Core Protein, Core Antigen, Hbcag, P21.5
Engineered: Yes
Mutation: Yes
 Organism_scientific: Hepatitis B Virus Subtype Adyw
Organism_common: Hbv-D
Organism_taxid: 10419
Strain: Adyw
Gene: C
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11c
symmetry Space Group: P 31
R_factor 0.217 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.162 104.162 86.917 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceConformational changes in the hepatitis B virus core protein are consistent with a role for allostery in virus assembly., Packianathan C, Katen SP, Dann CE 3rd, Zlotnick A, J Virol. 2010 Feb;84(3):1607-15. Epub 2009 Nov 25. PMID:19939922
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (3kxs.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3kxs.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3kxs.pdb3.gz) 46 Kb
  • CSU: Contacts of Structural Units for 3KXS
  • Structure Factors (759 Kb)
  • Retrieve 3KXS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KXS from S2C, [Save to disk]
  • Re-refined 3kxs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KXS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KXS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KXS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kxs_C] [3kxs_E] [3kxs] [3kxs_B] [3kxs_D] [3kxs_F] [3kxs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3KXS
  • Community annotation for 3KXS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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