3NGM	Hydrolase	date	Jun 12, 2010
title	Crystal Structure Of Lipase From Gibberella Zeae
authors	Z.Y.Lou, M.Li, Y.N.Sun, Y.Liu, Z.Liu, Z.H.Rao
compound		source
Molecule: Extracellular Lipase Chain: A, B, C, D Fragment: Residues 1-319 Ec: 3.1.1.3 Engineered: Yes		Organism_scientific: Gibberella Zeae Organism_taxid: 5518 Gene: Fgl1 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: Km71 Expression_system_vector_type: Plasmid Expression_system_plasmid: Plizg7
symmetry	Space Group: P 21 21 21	R_factor 0.238 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.417 91.001 195.802 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand		enzyme	Hydrolase E.C.3.1.1.3 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of a secreted lipase from Gibberella zeae reveals a novel "double-lock" mechanism., Lou Z, Li M, Sun Y, Liu Y, Liu Z, Wu W, Rao Z, Protein Cell. 2010 Aug;1(8):760-70. Epub 2010 Aug 28. PMID:21203917

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (3ngm.pdb1.gz) 46 Kb Biological Unit Coordinates (3ngm.pdb2.gz) 47 Kb Biological Unit Coordinates (3ngm.pdb3.gz) 47 Kb Biological Unit Coordinates (3ngm.pdb4.gz) 46 Kb CSU: Contacts of Structural Units for 3NGM Structure Factors (477 Kb) Retrieve 3NGM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NGM from S2C, [Save to disk] Re-refined 3ngm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NGM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3NGM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3NGM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ngm_C] [3ngm_B] [3ngm_A] [3ngm] [3ngm_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3NGM

Community annotation for 3NGM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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