4V7R Yeast 80S ribosome. date
authors Ben-Shem, A., Jenner, L., Yusupova, G., Yusupov, M.
compound source
symmetry
R_factor
R_Free 0.341
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.00
note 4V7R supersedes 3O2Z, 3O30, 3O58, 3O5H
Gene
Ontology
ChainFunctionProcessComponent
AA, CA


AB, CB


AC, CC

  • cytosolic small ribosomal su...
  • AH, CH


    AI, CI


    AL, CL


    AM, CM

  • cytosolic small ribosomal su...
  • AN, CN

  • cytosolic small ribosomal su...
  • AO, CO

  • cytosolic small ribosomal su...
  • AS, CS

  • cytosolic small ribosomal su...
  • AT, CT
  • GDP-dissociation inhibitor a...


  • BA, DA

  • cytosolic large ribosomal su...
  • BB, DB


    BC, DC

  • cytosolic large ribosomal su...
  • BE, DE

  • cytosolic large ribosomal su...
  • BF, DF


    BN, DN

  • cytosolic large ribosomal su...
  • BO, DO


    BQ, DQ


    BS, DS

  • cytosolic large ribosomal su...
  • BT, DT

  • cytosolic large ribosomal su...
  • BW, DW

  • cytosolic large ribosomal su...
  • BX, DX


    BY, DY

  • cytosolic large ribosomal su...
  • Ba, Da


    Bc, Dc

  • cytosolic large ribosomal su...
  • Bd, Dd

  • cytosolic large ribosomal su...
  • Bf, Df

  • cytosolic large ribosomal su...
  • Bg, Dg

  • cytosolic large ribosomal su...
  • CD, AD

  • cytosolic small ribosomal su...
  • CE, AE

  • cytosolic small ribosomal su...
  • CF, AF

  • cytosolic small ribosomal su...
  • CG, AG

  • cytosolic small ribosomal su...
  • CJ, AJ


    CK, AK


    CP, AP


    CQ, AQ

  • cytosolic small ribosomal su...
  • CR, AR

  • cytosolic small ribosomal su...
  • DD, BD

  • cytosolic large ribosomal su...
  • DG, BG


    DH, BH

  • cytosolic large ribosomal su...
  • DI, BI


    DJ, BJ

  • cytosolic large ribosomal su...
  • DK, BK

  • cytosolic large ribosomal su...
  • DL

  • cytosolic large ribosomal su...
  • DM


    DP, BP

  • cytosolic large ribosomal su...
  • DR, BR

  • cytosolic large ribosomal su...
  • DU, BU

  • cytosolic large ribosomal su...
  • DV, BV

  • cytosolic large ribosomal su...
  • DZ, BZ

  • cytosolic large ribosomal su...
  • Db, Bb

  • cytosolic large ribosomal su...
  • De, Be

  • cytosolic large ribosomal su...
  • Primary referenceCrystal structure of the eukaryotic ribosome., Ben-Shem A, Jenner L, Yusupova G, Yusupov M, Science. 2010 Nov 26;330(6008):1203-9. PMID:21109664
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2248 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V7R
  • Structure Factors (5179 Kb)
  • Retrieve 4V7R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V7R from S2C, [Save to disk]
  • View 4V7R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V7R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v7r_A1] [4v7r_DH] [4v7r_AS] [4v7r_BG] [4v7r_Bn] [4v7r_Bm] [4v7r_DW] [4v7r_Ch] [4v7r_Bo] [4v7r_CH] [4v7r_Bg] [4v7r_CJ] [4v7r_CB] [4v7r_CC] [4v7r_CI] [4v7r_Db] [4v7r_AF] [4v7r_Ac] [4v7r_Bi] [4v7r_Df] [4v7r_AT] [4v7r_AR] [4v7r_CD] [4v7r_Bf] [4v7r_CQ] [4v7r_Aa] [4v7r_AH] [4v7r_D3] [4v7r_Br] [4v7r] [4v7r_CM] [4v7r_BK] [4v7r_DI] [4v7r_DU] [4v7r_AG] [4v7r_AO] [4v7r_Ba] [4v7r_CK] [4v7r_CF] [4v7r_AQ] [4v7r_BA] [4v7r_DZ] [4v7r_Bp] [4v7r_DT] [4v7r_BW] [4v7r_DL] [4v7r_DC] [4v7r_DO] [4v7r_CN] [4v7r_BI] [4v7r_BP] [4v7r_DP] [4v7r_DA] [4v7r_DV] [4v7r_Af] [4v7r_Ab] [4v7r_DS] [4v7r_Cd] [4v7r_CL] [4v7r_BY] [4v7r_BF] [4v7r_BT] [4v7r_Ae] [4v7r_AC] [4v7r_Dg] [4v7r_Bl] [4v7r_Di] [4v7r_CO] [4v7r_Bq] [4v7r_B3] [4v7r_CA] [4v7r_DM] [4v7r_BJ] [4v7r_BC] [4v7r_Be] [4v7r_DK] [4v7r_DN] [4v7r_Bb] [4v7r_BH] [4v7r_DY] [4v7r_DJ] [4v7r_AM] [4v7r_BS] [4v7r_BV] [4v7r_AK] [4v7r_DB] [4v7r_Bc] [4v7r_CR] [4v7r_AB] [4v7r_AL] [4v7r_DR] [4v7r_CE] [4v7r_BD] [4v7r_Bd] [4v7r_Ah] [4v7r_BX] [4v7r_BZ] [4v7r_DQ] [4v7r_AE] [4v7r_Cc] [4v7r_B2] [4v7r_BO] [4v7r_CT] [4v7r_BQ] [4v7r_Bj] [4v7r_Da] [4v7r_Dj] [4v7r_Dc] [4v7r_D1] [4v7r_DE] [4v7r_D2] [4v7r_Ca] [4v7r_BN] [4v7r_AN] [4v7r_CG] [4v7r_CP] [4v7r_AJ] [4v7r_BU] [4v7r_Dd] [4v7r_BE] [4v7r_AA] [4v7r_B1] [4v7r_BR] [4v7r_Bh] [4v7r_De] [4v7r_AD] [4v7r_Ad] [4v7r_Dh] [4v7r_DD] [4v7r_DX] [4v7r_CS] [4v7r_AP] [4v7r_DG] [4v7r_DF] [4v7r_C1] [4v7r_Cb] [4v7r_AI] [4v7r_Bk] [4v7r_Dk] [4v7r_BB]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V7R: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S4] [S4] [WD40 ] by SMART
  • Other resources with information on 4V7R
  • Community annotation for 4V7R at PDBWiki (http://pdbwiki.org)

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