3R0H Peptide Binding Protein date Mar 08, 2011
title Structure Of Inad Pdz45 In Complex With Ng2 Peptide
authors Z.Wei, W.Liu, M.Zhang
compound source
Molecule: Inactivation-No-After-Potential D Protein
Chain: A, B, C, D, E, F, G, H
Fragment: Unp Residues 473-674
Synonym: Inad
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Cg3504, Inad
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Ng2
Chain: a, b, c, d, e, f, g, h
Engineered: Yes
Synthetic: Yes
Other_details: Ng2 Peptide Is Synthesized By A Company
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.079 134.988 215.986 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand DTT, DTV, SO4 enzyme
Primary referenceThe INAD scaffold is a dynamic, redox-regulated modulator of signaling in the Drosophila eye., Liu W, Wen W, Wei Z, Yu J, Ye F, Liu CH, Hardie RC, Zhang M, Cell. 2011 Jun 24;145(7):1088-101. PMID:21703451
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk]
  • Biological Unit Coordinates (3r0h.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (3r0h.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (3r0h.pdb3.gz) 70 Kb
  • Biological Unit Coordinates (3r0h.pdb4.gz) 71 Kb
  • Biological Unit Coordinates (3r0h.pdb5.gz) 71 Kb
  • Biological Unit Coordinates (3r0h.pdb6.gz) 71 Kb
  • Biological Unit Coordinates (3r0h.pdb7.gz) 69 Kb
  • Biological Unit Coordinates (3r0h.pdb8.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3R0H
  • CSU: Contacts of Structural Units for 3R0H
  • Structure Factors (1012 Kb)
  • Retrieve 3R0H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R0H from S2C, [Save to disk]
  • Re-refined 3r0h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3R0H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3R0H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R0H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r0h_D] [3r0h_E] [3r0h_A] [3r0h_c] [3r0h_a] [3r0h_f] [3r0h_B] [3r0h_C] [3r0h_G] [3r0h_b] [3r0h_h] [3r0h] [3r0h_F] [3r0h_e] [3r0h_d] [3r0h_g] [3r0h_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3R0H: [PDZ ] by SMART
    • Other resources with information on 3R0H
  • Community annotation for 3R0H at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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