3RLH	Hydrolase	date	Apr 19, 2011
title	Crystal Structure Of A Class II Phospholipase D From Loxosce Intermedia Venom
authors	P.O.Giuseppe, A.Ullah, S.S.Veiga, M.T.Murakami, R.K.Arni
compound		source
Molecule: Sphingomyelin Phosphodiesterase D Lisictox-Alphai Chain: A Fragment: Mature Phospholipase D Synonym: Dermonecrotic Protein 1, Lirecdt1, Sphingomyelin Phosphodiesterase D 1, Smd 1, Smase D 1, Sphingomyelinase D Ec: 3.1.4.41 Engineered: Yes Mutation: Yes		Organism_scientific: Loxosceles Intermedia Organism_common: Spider Organism_taxid: 58218 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-14b
symmetry	Space Group: P 1 21 1	R_factor 0.172 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.810 49.300 56.300 90.00 105.83 90.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	EDO, MG, PEG, PGE	enzyme	Hydrolase E.C.3.1.4.41 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge., de Giuseppe PO, Ullah A, Silva DT, Gremski LH, Wille AC, Chaves Moreira D, Ribeiro AS, Chaim OM, Murakami MT, Veiga SS, Arni RK, Biochem Biophys Res Commun. 2011 Jun 17;409(4):622-7. Epub 2011 May 17. PMID:21616057

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (3rlh.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 3RLH CSU: Contacts of Structural Units for 3RLH Structure Factors (1475 Kb) Retrieve 3RLH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RLH from S2C, [Save to disk] Re-refined 3rlh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RLH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rlh] [3rlh_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 3RLH at PDBWiki (http://pdbwiki.org)

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