3SCI Hydrolase Viral Protein date Jun 07, 2011
title Crystal Structure Of Spike Protein Receptor-Binding Domain F Predicted Sars Coronavirus Human Strain Complexed With Huma Ace2
authors K.Wu, G.Peng, M.Wilken, R.Geraghty, F.Li
compound source
Molecule: Angiotensin-Converting Enzyme 2
Chain: A, B
Fragment: Unp Residues 19-615
Synonym: Ace2, Ace-Related Carboxypeptidase, Angiotensin-Co Enzyme Homolog, Aceh, Metalloprotease Mprot15, Processed An Converting Enzyme 2;
Ec: 3.4.17.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ace2, Unq868pro1885
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Spike Glycoprotein
Chain: E, F
Fragment: Receptor Binding Domain (Unp Residues 306-527)
Synonym: S Glycoprotein, E2, Peplomer Protein, Spike Protei
Engineered: Yes

Organism_scientific: Sars Coronavirus
Organism_common: Sars-Cov
Organism_taxid: 227859
Gene: S, 2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.362 118.332 111.937 90.00 93.06 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CL, ZN enzyme Hydrolase E.C.3.4.17.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanisms of host receptor adaptation by severe acute respiratory syndrome coronavirus., Wu K, Peng G, Wilken M, Geraghty RJ, Li F, J Biol Chem. 2012 Mar 16;287(12):8904-11. Epub 2012 Jan 30. PMID:22291007
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk]
  • Biological Unit Coordinates (3sci.pdb1.gz) 245 Kb
  • Biological Unit Coordinates (3sci.pdb2.gz) 244 Kb
  • LPC: Ligand-Protein Contacts for 3SCI
  • CSU: Contacts of Structural Units for 3SCI
  • Structure Factors (252 Kb)
  • Retrieve 3SCI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SCI from S2C, [Save to disk]
  • Re-refined 3sci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SCI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SCI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SCI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sci] [3sci_B] [3sci_E] [3sci_F] [3sci_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SCI
  • Community annotation for 3SCI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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