3TUD Transferase Transferase Inhibitor date Sep 16, 2011
title Crystal Structure Of Syk Kinase Domain With N-(4-Methyl-3-(8 Oxo-2-(Phenylamino)-7,8-Dihydropyrido[2,3-D]Pyrimidin-6-Yl) (Trifluoromethyl)Benzamide
authors F.Lovering, J.Mcdonald, G.Whitlock, P.Glossop, C.Phillips, Y.Sabn M.Ryan, L.Fitz, J.Lee, J.S.Chang, S.Han, R.Kurumbail, A.Thorarens
compound source
Molecule: Tyrosine-Protein Kinase Syk
Chain: A
Fragment: Spleen Tyrosine Kinase
Synonym: Spleen Tyrosine Kinase
Ec: 2.7.10.2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Syk
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.799 68.066 82.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.33 Å
ligand FPX enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of Type-II Inhibitors Using Kinase Structures., Lovering F, McDonald J, Whitlock GA, Glossop PA, Phillips C, Bent A, Sabnis Y, Ryan M, Fitz L, Lee J, Chang JS, Han S, Kurumbail R, Thorarensen A, Chem Biol Drug Des. 2012 Jul 3. doi: 10.1111/j.1747-0285.2012.01443.x. PMID:22759374
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3tud.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3TUD
  • CSU: Contacts of Structural Units for 3TUD
  • Structure Factors (540 Kb)
  • Retrieve 3TUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TUD from S2C, [Save to disk]
  • Re-refined 3tud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TUD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TUD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tud_A] [3tud]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TUD: [TyrKc ] by SMART
    • Other resources with information on 3TUD
  • Community annotation for 3TUD at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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