3VSV	Hydrolase	date	May 09, 2012
title	The Complex Structure Of Xylc With Xylose
authors	C.H.Huang, Y.Sun, T.P.Ko, Y.Ma, C.C.Chen, Y.Zheng, H.C.Chan, X.Pang J.Wiegel, W.Shao, R.T.Guo
compound		source
Molecule: Xylosidase Chain: A, B, C, D Synonym: Beta-Xylosidase Ec: 3.2.1.37 Engineered: Yes		Organism_scientific: Thermoanaerobacterium Organism_taxid: 60708 Strain: Jwsl Ys485 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phsh
symmetry	Space Group: P 1 21 1	R_factor 0.150 R_Free 0.168
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.779 201.948 100.105 90.00 99.18 90.00
method	X-Ray Diffraction	resolution	1.48 Å
ligand	XYP, XYS	enzyme	Hydrolase E.C.3.2.1.37 BRENDA
Primary reference	The substrate/product-binding modes of a novel GH120 beta-xylosidase (XylC) from Thermoanaerobacterium saccharolyticum JW/SL-YS485., Huang CH, Sun Y, Ko TP, Chen CC, Zheng Y, Chan HC, Pang X, Wiegel J, Shao W, Guo RT, Biochem J. 2012 Dec 15;448(3):401-7. doi: 10.1042/BJ20121359. PMID:22992047

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (486 Kb) [Save to disk] Biological Unit Coordinates (3vsv.pdb1.gz) 479 Kb LPC: Ligand-Protein Contacts for 3VSV CSU: Contacts of Structural Units for 3VSV Structure Factors (5620 Kb) Retrieve 3VSV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VSV from S2C, [Save to disk] Re-refined 3vsv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VSV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VSV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VSV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vsv_C] [3vsv_D] [3vsv_A] [3vsv_B] [3vsv] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VSV: [PbH1 ] by SMART

Other resources with information on 3VSV

Community annotation for 3VSV at PDBWiki (http://pdbwiki.org)

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