3WJX	Lyase	date	Oct 17, 2013
title	Wild-Type Orotidine 5'-Monophosphate Decarboxylase From M. Thermoautotrophicus Complexed With 6-Amino-Ump
authors	M.Fujihashi, S.Kuroda, E.F.Pai, K.Miki
compound		source
Molecule: Orotidine 5'-Phosphate Decarboxylase Chain: A Synonym: Omp Decarboxylase, Ompdcase, Ompdecase Ec: 4.1.1.23 Engineered: Yes Mutation: Yes		Organism_scientific: Methanothermobacter Thermautotrophicus Organism_taxid: 187420 Strain: Atcc 29096 Dsm 1053 Jcm 10044 Nbrc 100330 D Gene: Pyrf, Mth_129 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: C 2 2 21	R_factor 0.156 R_Free 0.164
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.885 103.351 73.579 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.23 Å
ligand	GOL, NUP	enzyme	Lyase E.C.4.1.1.23 BRENDA
Gene	MTH
Gene Ontology	Chain Function Process Component A
Primary reference	Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase., Fujihashi M, Ishida T, Kuroda S, Kotra LP, Pai EF, Miki K, J Am Chem Soc. 2013 Nov 20;135(46):17432-43. doi: 10.1021/ja408197k. Epub 2013, Nov 11. PMID:24151964

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3wjx.pdb1.gz) 166 Kb LPC: Ligand-Protein Contacts for 3WJX CSU: Contacts of Structural Units for 3WJX Structure Factors (1815 Kb) Retrieve 3WJX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WJX from S2C, [Save to disk] Re-refined 3wjx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WJX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WJX

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WJX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wjx_A] [3wjx] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WJX: [OMPdecase ] by SMART

Other resources with information on 3WJX

Community annotation for 3WJX at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---