4GFB Rap1/DNA complex date 2012-08-03
authors Bihan, Y.V.Le., Matot, B., Du, M.H.Le.
compound source
symmetry
R_factor
R_Free 0.2690
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.99
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEffect of Rap1 binding on DNA distortion and potassium permanganate hypersensitivity., Le Bihan YV, Matot B, Pietrement O, Giraud-Panis MJ, Gasparini S, Le Cam E, Gilson E, Sclavi B, Miron S, Le Du MH, Acta Crystallogr D Biol Crystallogr. 2013 Mar;69(Pt 3):409-19. doi:, 10.1107/S0907444912049311. Epub 2013 Feb 16. PMID:23519416
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (4gfb.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 4GFB
  • CSU: Contacts of Structural Units for 4GFB
  • Structure Factors (75 Kb)
  • Retrieve 4GFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GFB from S2C, [Save to disk]
  • Re-refined 4gfb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GFB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GFB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gfb_A] [4gfb_C] [4gfb] [4gfb_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GFB: [SANT ] by SMART
    • Other resources with information on 4GFB
  • Community annotation for 4GFB at PDBWiki (http://pdbwiki.org)

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