4V9L 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. date
authors Zhou, J., Lancaster, L., Donohue, J.P., Noller, H.F.
compound source
symmetry
R_factor
R_Free 0.3275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
note 4V9L supersedes 4KD8, 4KD9, 4KDA, 4KDB
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AY, CY


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BC, DC


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


BY, DY


CD, AD


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


D2, B2


D5, B5


D8, B8


D9, B9


DD, BD


DG, BG


DH, BH


DK, BK


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


De, Be


Primary referenceCrystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation., Zhou J, Lancaster L, Donohue JP, Noller HF, Science. 2013 Jun 28;340(6140):1236086. doi: 10.1126/science.1236086. PMID:23812722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1779 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V9L
  • Structure Factors (6807 Kb)
  • Retrieve 4V9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V9L from S2C, [Save to disk]
  • View 4V9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v9l_B4] [4v9l_AL] [4v9l_AN] [4v9l_CJ] [4v9l_B5] [4v9l_CA] [4v9l_DE] [4v9l_AD] [4v9l_D5] [4v9l_BB] [4v9l_BD] [4v9l_AR] [4v9l_AK] [4v9l_B2] [4v9l_CB] [4v9l_BE] [4v9l_AW] [4v9l_BU] [4v9l_CO] [4v9l_CP] [4v9l_BS] [4v9l_BT] [4v9l_CI] [4v9l_CU] [4v9l_CF] [4v9l_BC] [4v9l_BW] [4v9l_AS] [4v9l_CL] [4v9l_CE] [4v9l_CR] [4v9l_DF] [4v9l_DD] [4v9l_CM] [4v9l_DC] [4v9l_B0] [4v9l_AP] [4v9l_CD] [4v9l_CH] [4v9l_AJ] [4v9l_DK] [4v9l_B9] [4v9l_AY] [4v9l_D7] [4v9l_AU] [4v9l_AM] [4v9l_BG] [4v9l_CY] [4v9l_B1] [4v9l_CG] [4v9l_DB] [4v9l_BA] [4v9l_D2] [4v9l_DN] [4v9l_DS] [4v9l_DY] [4v9l_Bh] [4v9l_D3] [4v9l_AQ] [4v9l_AH] [4v9l_DG] [4v9l_B6] [4v9l_CC] [4v9l_BP] [4v9l_BK] [4v9l_DP] [4v9l_BQ] [4v9l_BX] [4v9l_AO] [4v9l_Dg] [4v9l_DT] [4v9l_DH] [4v9l_D8] [4v9l_DQ] [4v9l_DV] [4v9l_CK] [4v9l] [4v9l_De] [4v9l_Be] [4v9l_B3] [4v9l_BJ] [4v9l_AG] [4v9l_DU] [4v9l_CT] [4v9l_B7] [4v9l_CV] [4v9l_D4] [4v9l_BH] [4v9l_Bg] [4v9l_CN] [4v9l_DO] [4v9l_DR] [4v9l_BO] [4v9l_DZ] [4v9l_AT] [4v9l_AA] [4v9l_BV] [4v9l_BR] [4v9l_BZ] [4v9l_AI] [4v9l_CW] [4v9l_D1] [4v9l_BF] [4v9l_CS] [4v9l_D9] [4v9l_DX] [4v9l_AF] [4v9l_AV] [4v9l_CQ] [4v9l_AB] [4v9l_DW] [4v9l_DJ] [4v9l_B8] [4v9l_BY] [4v9l_Df] [4v9l_D0] [4v9l_AE] [4v9l_D6] [4v9l_BN] [4v9l_DA] [4v9l_AC] [4v9l_Bf] [4v9l_Dh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V9L: [EFG_C] [EFG_IV] [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V9L
  • Community annotation for 4V9L at PDBWiki (http://pdbwiki.org)

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