4U27 Crystal structure of the E. coli ribosome bound to flopristin and linopristin. date
authors Noeske, J., Huang, J., Olivier, N.B., Giacobbe, R.A., Zambrowski, M., Cate, J.H.D.
compound source
symmetry
R_factor
R_Free 0.2604
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
note 4U27 supersedes 4TPC, 4TPD, 4TPE, 4TPF
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO
  • mRNA binding involved in pos...


    • AS, CS


    AT, CT
  • ornithine decarboxylase inhi...


    • AU, CU


    B0, D0


    B1, D1


    B3, D3


    B4, D4


    B5


    BC, DC


    BE, DE


    BF, DF


    BL, DL


    BN, DN


    BO, DO


    BQ, DQ
  • translation repressor activi...


    • BS, DS


    BT, DT


    BW, DW


    BX, DX


    BY, DY


    CD, AD


    CE, AE


    CF, AF


    CG, AG


    CJ, AJ


    CK, AK


    CP, AP
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


    • CQ, AQ


    CR, AR


    D2, B2


    DD, BD


    DG, BG


    DH, BH


    DI, BI


    DJ, BJ


    DK, BK


    DM, BM


    DP, BP


    DR, BR


    DU, BU


    DV, BV


    DZ, BZ


    Primary referenceSynergy of streptogramin antibiotics occurs independently of their effects on translation., Noeske J, Huang J, Olivier NB, Giacobbe RA, Zambrowski M, Cate JH, Antimicrob Agents Chemother. 2014 Jun 23. pii: AAC.03389-14. PMID:24957822
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1031 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4U27
  • Structure Factors (10409 Kb)
  • Retrieve 4U27 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U27 from S2C, [Save to disk]
    • View 4U27 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U27
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u27_BD] [4u27_AE] [4u27_BY] [4u27_BJ] [4u27_CL] [4u27_DI] [4u27_AS] [4u27_CB] [4u27_D4] [4u27_D0] [4u27_BK] [4u27_BF] [4u27] [4u27_CF] [4u27_DF] [4u27_DJ] [4u27_BB] [4u27_DS] [4u27_AT] [4u27_CG] [4u27_DD] [4u27_AB] [4u27_DY] [4u27_DG] [4u27_AO] [4u27_CI] [4u27_CP] [4u27_CM] [4u27_AG] [4u27_D1] [4u27_CA] [4u27_CD] [4u27_CK] [4u27_BZ] [4u27_CO] [4u27_DP] [4u27_BE] [4u27_AN] [4u27_AP] [4u27_CR] [4u27_BV] [4u27_B5] [4u27_DU] [4u27_AI] [4u27_AD] [4u27_BS] [4u27_DE] [4u27_B1] [4u27_AF] [4u27_DQ] [4u27_BL] [4u27_BW] [4u27_CH] [4u27_CC] [4u27_B3] [4u27_DH] [4u27_CU] [4u27_BN] [4u27_BI] [4u27_D2] [4u27_DB] [4u27_CJ] [4u27_DZ] [4u27_CT] [4u27_CN] [4u27_DX] [4u27_CS] [4u27_BR] [4u27_AK] [4u27_BU] [4u27_DC] [4u27_DM] [4u27_B0] [4u27_DO] [4u27_DW] [4u27_B6] [4u27_BT] [4u27_BG] [4u27_AU] [4u27_BP] [4u27_D3] [4u27_AM] [4u27_DL] [4u27_B4] [4u27_DV] [4u27_BX] [4u27_D6] [4u27_AR] [4u27_BO] [4u27_BC] [4u27_DN] [4u27_AJ] [4u27_BH] [4u27_DK] [4u27_DR] [4u27_AL] [4u27_BA] [4u27_CQ] [4u27_AA] [4u27_AH] [4u27_DA] [4u27_AC] [4u27_AQ] [4u27_CE] [4u27_DT] [4u27_BM] [4u27_BQ] [4u27_B2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4U27: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 4U27
  • Community annotation for 4U27 at PDBWiki (http://pdbwiki.org)

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