4U50 Crystal structure of Verrucarin bound to the yeast 80S ribosome date
authors Loubresse, N.Garreau.de., Prokhorova, I., Yusupova, G., Yusupov, M.
compound source
symmetry
R_factor
R_Free 0.2619
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
note 4U50 supersedes 4ULP, 4ULQ, 4ULR, 4ULS, 4ULT
Gene
Ontology
ChainFunctionProcessComponent
C0, c0


C1, c1

  • cytosolic small ribosomal su...
  • C2, c2

  • cytosolic small ribosomal su...
  • C5, c5


    C7, c7


    C8, c8


    D1, d1

  • cytosolic small ribosomal su...
  • D2, d2

  • cytosolic small ribosomal su...
  • D7, d7

  • cytosolic small ribosomal su...
  • L2, l2


    L5, l5

  • cytosolic large ribosomal su...
  • L6, l6


    L9, l9


    M0, m0

  • cytosolic large ribosomal su...
  • M1, m1

  • cytosolic large ribosomal su...
  • M3, m3

  • cytosolic large ribosomal su...
  • M5, m5


    M6, m6

  • cytosolic large ribosomal su...
  • M8, m8

  • cytosolic large ribosomal su...
  • M9, m9

  • cytosolic large ribosomal su...
  • N0, n0

  • cytosolic large ribosomal su...
  • N3, n3

  • cytosolic large ribosomal su...
  • N5, n5

  • cytosolic large ribosomal su...
  • N6, n6


    O1, o1


    O4, o4

  • preribosome, large subunit p...
  • O7, o7

  • cytosolic large ribosomal su...
  • O8, o8

  • cytosolic large ribosomal su...
  • O9, o9

  • cytosolic large ribosomal su...
  • Q3, q3

  • cytosolic large ribosomal su...
  • S0, s0


    S3, s3

  • cytosolic small ribosomal su...
  • S4, s4

  • cytosolic small ribosomal su...
  • S7, s7


    S9, s9

  • cytosolic small ribosomal su...
  • SR, sR
  • GDP-dissociation inhibitor a...


  • c3, C3

  • cytosolic small ribosomal su...
  • c4, C4


    c6, C6


    c9, C9

  • cytosolic small ribosomal su...
  • d0, D0

  • cytosolic small ribosomal su...
  • d3, D3


    d4, D4


    d5, D5

  • cytosolic small ribosomal su...
  • d6, D6


    d8, D8

  • cytosolic small ribosomal su...
  • d9, D9

  • cytosolic small ribosomal su...
  • e0, E0


    e1, E1


    l3, L3

  • cytosolic large ribosomal su...
  • l4, L4

  • cytosolic large ribosomal su...
  • l7, L7


    l8, L8

  • cytosolic large ribosomal su...
  • m4, M4

  • cytosolic large ribosomal su...
  • m7, M7


    n1, N1

  • cytosolic large ribosomal su...
  • n2, N2


    n4, N4

  • cytosolic large ribosomal su...
  • n7, N7

  • cytosolic large ribosomal su...
  • n8, N8

  • cytosolic large ribosomal su...
  • n9, N9


    o0, O0

  • cytosolic large ribosomal su...
  • o2, O2

  • cytosolic large ribosomal su...
  • o3, O3


    o5, O5

  • cytosolic large ribosomal su...
  • o6, O6


    p0


    q0, Q0


    q1, Q1


    q2, Q2

  • cytosolic large ribosomal su...
  • s1, S1


    s2, S2


    s5, S5

  • cytosolic small ribosomal su...
  • s6, S6

  • cytosolic small ribosomal su...
  • s8, S8

  • cytosolic small ribosomal su...
  • sM, SM


    Primary referenceStructural basis for the inhibition of the eukaryotic ribosome., Garreau de Loubresse N, Prokhorova I, Holtkamp W, Rodnina MV, Yusupova G, Yusupov M, Nature. 2014 Sep 25;513(7519):517-22. doi: 10.1038/nature13737. Epub 2014 Sep 10. PMID:25209664
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3190 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4U50
  • Structure Factors (21515 Kb)
  • Retrieve 4U50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U50 from S2C, [Save to disk]
  • View 4U50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U50
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u50_s5] [4u50_d1] [4u50_3] [4u50_7] [4u50_d7] [4u50_q1] [4u50_p2] [4u50_L8] [4u50_m3] [4u50_C8] [4u50_s3] [4u50_s6] [4u50_c7] [4u50_c8] [4u50_m0] [4u50_L4] [4u50_Q2] [4u50_D4] [4u50_N2] [4u50_N7] [4u50_n8] [4u50_M1] [4u50_O9] [4u50_C9] [4u50_C0] [4u50_sM] [4u50_d3] [4u50_S7] [4u50_C2] [4u50_q2] [4u50_S1] [4u50_D9] [4u50_o3] [4u50_L2] [4u50_O6] [4u50_o6] [4u50_c5] [4u50_d0] [4u50_o0] [4u50_L5] [4u50_O5] [4u50_n0] [4u50_O0] [4u50_C5] [4u50_o4] [4u50_C7] [4u50_d5] [4u50_n5] [4u50_E1] [4u50_D1] [4u50_S3] [4u50_D0] [4u50_D2] [4u50_S4] [4u50_n9] [4u50_S9] [4u50_q0] [4u50_d9] [4u50_s2] [4u50_C1] [4u50_O7] [4u50_5] [4u50_s0] [4u50_4] [4u50_o7] [4u50_m5] [4u50_m7] [4u50_8] [4u50_M6] [4u50_e1] [4u50_N6] [4u50_C4] [4u50_o2] [4u50_o9] [4u50_e0] [4u50_O2] [4u50_d8] [4u50_L9] [4u50_1] [4u50_Q3] [4u50_N0] [4u50_N9] [4u50_p1] [4u50_M9] [4u50_6] [4u50_C6] [4u50_SM] [4u50_m6] [4u50_n1] [4u50_d6] [4u50_c9] [4u50_M8] [4u50_S5] [4u50_N8] [4u50_c0] [4u50_l4] [4u50_D6] [4u50_m1] [4u50_o1] [4u50_d4] [4u50_O8] [4u50_p0] [4u50_D5] [4u50_c4] [4u50_SR] [4u50_L7] [4u50_o8] [4u50_c1] [4u50_n3] [4u50_c6] [4u50_S8] [4u50_M7] [4u50_m8] [4u50_O1] [4u50_Q0] [4u50_l5] [4u50_N1] [4u50_S2] [4u50_L3] [4u50_l6] [4u50_Q1] [4u50_n7] [4u50_l9] [4u50_d2] [4u50_l8] [4u50_sR] [4u50_M3] [4u50_D3] [4u50_o5] [4u50_s8] [4u50_M0] [4u50_S0] [4u50_O3] [4u50_C3] [4u50_O4] [4u50_s4] [4u50_N4] [4u50_s7] [4u50_M5] [4u50_l2] [4u50_n6] [4u50_2] [4u50] [4u50_n4] [4u50_n2] [4u50_l3] [4u50_E0] [4u50_L6] [4u50_m9] [4u50_D8] [4u50_c3] [4u50_M4] [4u50_s9] [4u50_q3] [4u50_c2] [4u50_l7] [4u50_m4] [4u50_S6] [4u50_m2] [4u50_s1] [4u50_N3] [4u50_D7] [4u50_N5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4U50: [HABP4_PAI-RBP1] [KH] [KOW] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [WD40 ] by SMART
  • Other resources with information on 4U50
  • Community annotation for 4U50 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science