4V42	Crystal structure of the ribosome at 5.5 A resolution.	date
authors	Yusupov, M.M., Yusupova, G.Z., Baucom, A., Lieberman, K., Earnest, T.N., Cate, J.H.D., Noller, H.F.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	5.50
note	4V42 supersedes 1GIX, 1GIY
Gene Ontology	Chain Function Process Component AE AF AG AH AI AJ AK AL AM AN AO AP AQ AR AS AT AU AV AW AX BC BD BE BF BG BH BJ, BI BK BL BM BN BO BP BQ BR BS BT BU BV BW BX
Primary reference	Crystal structure of the ribosome at 5.5 A resolution., Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Earnest TN, Cate JH, Noller HF, Science. 2001 May 4;292(5518):883-96. Epub 2001 Mar 29. PMID:11283358

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk] CSU: Contacts of Structural Units for 4V42 Retrieve 4V42 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V42 from S2C, [Save to disk]

View 4V42 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V42

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v42_AC] [4v42_BR] [4v42_BG] [4v42_AO] [4v42_AW] [4v42_AR] [4v42] [4v42_BN] [4v42_BX] [4v42_AH] [4v42_AD] [4v42_BA] [4v42_BT] [4v42_BK] [4v42_AG] [4v42_BL] [4v42_AJ] [4v42_BP] [4v42_BJ] [4v42_BM] [4v42_BD] [4v42_BH] [4v42_BO] [4v42_AE] [4v42_AF] [4v42_AM] [4v42_BB] [4v42_AT] [4v42_BC] [4v42_AA] [4v42_BW] [4v42_AN] [4v42_BI] [4v42_AX] [4v42_AQ] [4v42_AS] [4v42_AV] [4v42_A1] [4v42_BF] [4v42_BS] [4v42_BV] [4v42_BU] [4v42_BE] [4v42_AU] [4v42_AK] [4v42_AB] [4v42_AP] [4v42_BQ] [4v42_AL] [4v42_AI] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4V42: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4] [TRASH ] by SMART

Other resources with information on 4V42

Community annotation for 4V42 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---