4V49 Ribosome date 3-0 20, 1999
authors A.Vila-Sanjurjo, W.K.Ridgeway, V.Seymaner, W.Zhang, S.Santos J.H.D.Cate
compound source
symmetry Space Group: I 4 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
682.320 682.320 386.360 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V49 supersedes 1PNS, 1PNU
Gene
Ontology
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Primary referenceX-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli., Vila-Sanjurjo A, Ridgeway WK, Seymaner V, Zhang W, Santoso S, Yu K, Cate JH, Proc Natl Acad Sci U S A. 2003 Jul 22;100(15):8682-7. Epub 2003 Jul 9. PMID:12853578
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (931 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V49
  • Structure Factors (273 Kb)
  • Retrieve 4V49 in mmCIF format [Save to disk]
  • View 4V49 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V49
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v49 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v49_AC] [4v49_BJ] [4v49_AB] [4v49_AI] [4v49_AS] [4v49_BK] [4v49_AH] [4v49_BL] [4v49_BH] [4v49_AE] [4v49_B3] [4v49_AP] [4v49_AN] [4v49_BV] [4v49_BT] [4v49_AM] [4v49_B2] [4v49_B4] [4v49_BW] [4v49_AF] [4v49_B5] [4v49_AO] [4v49] [4v49_BF] [4v49_BQ] [4v49_BE] [4v49_BX] [4v49_BZ] [4v49_AT] [4v49_BY] [4v49_AK] [4v49_BB] [4v49_AW] [4v49_AR] [4v49_AA] [4v49_BR] [4v49_B1] [4v49_BI] [4v49_BA] [4v49_BO] [4v49_BN] [4v49_AG] [4v49_BS] [4v49_BU] [4v49_B9] [4v49_BG] [4v49_AU] [4v49_AQ] [4v49_AV] [4v49_B0] [4v49_BP] [4v49_BD] [4v49_AJ] [4v49_AL] [4v49_BC] [4v49_AD] [4v49_BM]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V49: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V49
  • Community annotation for 4V49 at PDBWiki (http://pdbwiki.org)

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