4V4B Ribosome date 4-0 20, 2000
authors C.M.Spahn, M.G.Gomez-Lorenzo, R.A.Grassucci, R.Jorgensen, G.R.Andersen, R.Beckmann, P.A.Penczek, J.P.G.Ballesta, J.Fr
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
note 4V4B supersedes 1S1H, 1S1I
Gene
Ontology
ChainFunctionProcessComponent
AB


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AD

  • cytosolic small ribosomal su...
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    B0

  • cytosolic large ribosomal su...
  • B9

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  • BA

  • cytosolic large ribosomal su...
  • BB


    BC

  • cytosolic large ribosomal su...
  • BD

  • cytosolic large ribosomal su...
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    BF


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    BJ

  • cytosolic large ribosomal su...
  • BK


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    BQ


    BR

  • cytosolic large ribosomal su...
  • BT


    BU


    BV

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  • BW


    BX

  • cytosolic large ribosomal su...
  • BY

  • cytosolic large ribosomal su...
  • BZ

  • cytosolic large ribosomal su...
  • Primary referenceDomain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation., Spahn CM, Gomez-Lorenzo MG, Grassucci RA, Jorgensen R, Andersen GR, Beckmann R, Penczek PA, Ballesta JP, Frank J, EMBO J. 2004 Mar 10;23(5):1008-19. Epub 2004 Feb 19. PMID:14976550
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (940 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4B
  • Retrieve 4V4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4B from S2C, [Save to disk]
  • View 4V4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V4B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v4b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4b] [4v4b_AN] [4v4b_BS] [4v4b_BC] [4v4b_AG] [4v4b_AQ] [4v4b_BD] [4v4b_BH] [4v4b_AM] [4v4b_BZ] [4v4b_BM] [4v4b_AD] [4v4b_BF] [4v4b_BY] [4v4b_AK] [4v4b_BW] [4v4b_AA] [4v4b_AE] [4v4b_B4] [4v4b_AT] [4v4b_BV] [4v4b_BN] [4v4b_BL] [4v4b_BU] [4v4b_BE] [4v4b_BJ] [4v4b_BT] [4v4b_BQ] [4v4b_BI] [4v4b_AO] [4v4b_BG] [4v4b_B9] [4v4b_AS] [4v4b_BO] [4v4b_AH] [4v4b_B0] [4v4b_BA] [4v4b_BR] [4v4b_AL] [4v4b_AJ] [4v4b_AB] [4v4b_BP] [4v4b_BX] [4v4b_B3] [4v4b_AC] [4v4b_BK] [4v4b_AI] [4v4b_BB]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4B: [EFG_C] [EFG_IV] [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V4B
  • Community annotation for 4V4B at PDBWiki (http://pdbwiki.org)

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