4V4R Crystal structure of the whole ribosomal complex. date
authors Petry, S., Brodersen, D.E., IV, F.V.Murphy., Dunham, C.M., Selmer, M., Tarry, M.J., Kelley, A.C., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free 0.371
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.90
note 4V4R supersedes 2B64, 2B66
Gene
Ontology
ChainFunctionProcessComponent
AB


AC


AD


AE


AF


AG


AH


AI


AJ


AK


AL


AM


AN


AO


AP


AQ


AR


AS


AT


AU


AY


B0


B2


B3


B4


B5


B6


B7


B8


B9


BD


BE


BF


BG


BH


BI


BK


BN


BO


BP


BQ


BR


BS


BT


BU


BV


BW


BX


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BZ


Primary referenceCrystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon., Petry S, Brodersen DE, Murphy FV 4th, Dunham CM, Selmer M, Tarry MJ, Kelley AC, Ramakrishnan V, Cell. 2005 Dec 29;123(7):1255-66. PMID:16377566
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (982 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4R
  • Structure Factors (1234 Kb)
  • Retrieve 4V4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4R from S2C, [Save to disk]
  • View 4V4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V4R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4r_B0] [4v4r_BK] [4v4r_AE] [4v4r_AH] [4v4r_B9] [4v4r_BS] [4v4r_BQ] [4v4r_B2] [4v4r_BU] [4v4r_BF] [4v4r_B7] [4v4r_BA] [4v4r_BN] [4v4r_AJ] [4v4r_AU] [4v4r_BI] [4v4r_AB] [4v4r_AF] [4v4r_B5] [4v4r_BH] [4v4r_AI] [4v4r_AD] [4v4r_BD] [4v4r_BP] [4v4r_BB] [4v4r_AP] [4v4r_AQ] [4v4r_BG] [4v4r_BW] [4v4r_BT] [4v4r_AN] [4v4r_AA] [4v4r_AC] [4v4r_BZ] [4v4r] [4v4r_AO] [4v4r_BV] [4v4r_AG] [4v4r_BE] [4v4r_AM] [4v4r_BY] [4v4r_AX] [4v4r_AV] [4v4r_AR] [4v4r_BO] [4v4r_AS] [4v4r_BR] [4v4r_B3] [4v4r_AY] [4v4r_AL] [4v4r_B6] [4v4r_AT] [4v4r_B8] [4v4r_AK] [4v4r_BX] [4v4r_B4] [4v4r_AW]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4R: [KH] [KOW] [PCRF] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4] [TRASH ] by SMART
  • Other resources with information on 4V4R
  • Community annotation for 4V4R at PDBWiki (http://pdbwiki.org)

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