4V5E Insights into translational termination from the structure of RF2 bound to the ribosome date
authors Weixlbaumer, A., Jin, H., Neubauer, C., Voorhees, R.M., Petry, S., Kelley, A.C., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.45
note 4V5E supersedes 2WH1, 2WH2, 2WH3, 2WH4, 2JL5, 2JL6, 2JL7, 2JL8
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AU, CU


AY, CY


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BC, DC


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


BY, DY


CD, AD


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


D2, B2


D5, B5


D8, B8


D9, B9


DD, BD


DG, BG


DH, BH


DI, BI


DK, BK


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


Primary referenceInsights into translational termination from the structure of RF2 bound to the ribosome., Weixlbaumer A, Jin H, Neubauer C, Voorhees RM, Petry S, Kelley AC, Ramakrishnan V, Science. 2008 Nov 7;322(5903):953-6. PMID:18988853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1227 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V5E
  • Structure Factors (6024 Kb)
  • Retrieve 4V5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V5E from S2C, [Save to disk]
  • View 4V5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V5E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v5e_BQ] [4v5e_CT] [4v5e_DX] [4v5e_DF] [4v5e_B0] [4v5e_AO] [4v5e_CJ] [4v5e_CN] [4v5e_CD] [4v5e_B4] [4v5e_AP] [4v5e_BT] [4v5e_CG] [4v5e_CP] [4v5e_B2] [4v5e_AT] [4v5e_CK] [4v5e_AK] [4v5e_AF] [4v5e_AG] [4v5e_BR] [4v5e_AL] [4v5e_AE] [4v5e_DC] [4v5e_CH] [4v5e_DS] [4v5e_D3] [4v5e_CE] [4v5e_DA] [4v5e_BB] [4v5e_D0] [4v5e_BW] [4v5e_BC] [4v5e_AI] [4v5e_BP] [4v5e_BH] [4v5e_DE] [4v5e_AM] [4v5e_BI] [4v5e_DG] [4v5e_AU] [4v5e_CI] [4v5e_AH] [4v5e_AX] [4v5e_CB] [4v5e_BU] [4v5e_DU] [4v5e_DD] [4v5e_AD] [4v5e_DI] [4v5e_AV] [4v5e_B7] [4v5e] [4v5e_DN] [4v5e_B8] [4v5e_DT] [4v5e_CL] [4v5e_DK] [4v5e_BD] [4v5e_AQ] [4v5e_DH] [4v5e_AW] [4v5e_B6] [4v5e_CW] [4v5e_BN] [4v5e_B9] [4v5e_AN] [4v5e_DB] [4v5e_D8] [4v5e_B3] [4v5e_BS] [4v5e_BV] [4v5e_AY] [4v5e_BA] [4v5e_BK] [4v5e_AR] [4v5e_D9] [4v5e_AS] [4v5e_D1] [4v5e_BO] [4v5e_DP] [4v5e_DY] [4v5e_BJ] [4v5e_D2] [4v5e_AB] [4v5e_CV] [4v5e_BE] [4v5e_AA] [4v5e_CO] [4v5e_DQ] [4v5e_D7] [4v5e_BY] [4v5e_CF] [4v5e_D5] [4v5e_B1] [4v5e_AC] [4v5e_BF] [4v5e_DV] [4v5e_D6] [4v5e_CX] [4v5e_CY] [4v5e_BZ] [4v5e_CC] [4v5e_D4] [4v5e_DW] [4v5e_B5] [4v5e_BG] [4v5e_DO] [4v5e_CM] [4v5e_CA] [4v5e_CR] [4v5e_CS] [4v5e_DJ] [4v5e_CQ] [4v5e_CU] [4v5e_BX] [4v5e_DZ] [4v5e_AJ] [4v5e_DR]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V5E: [KH] [KOW] [PCRF] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V5E
  • Community annotation for 4V5E at PDBWiki (http://pdbwiki.org)

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