4V78	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	date
authors	Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	20.00
note	4V78 supersedes 3J5F, 3J5G
Gene Ontology	Chain Function Process Component AB AC AD AE AF AG AH AI AJ AK AL AM AN AO mRNA binding involved in pos... AP nuclease activity endonuclease activity endodeoxyribonuclease activi... AQ AR AS AT ornithine decarboxylase inhi... AU B0 B1 B2 B3 B4 B5 BC BD BE BF BG BH BI BJ BK BL BM BN BO BP BQ translation repressor activi... BR BS BT BU BV BW BX BY BZ
Primary reference	Energy barriers and driving forces in tRNA translocation through the ribosome., Bock LV, Blau C, Schroder GF, Davydov II, Fischer N, Stark H, Rodnina MV, Vaiana AC, Grubmuller H, Nat Struct Mol Biol. 2013 Nov 3. doi: 10.1038/nsmb.2690. PMID:24186064

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1365 Kb) [Save to disk] CSU: Contacts of Structural Units for 4V78 Retrieve 4V78 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V78 from S2C, [Save to disk]

View 4V78 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V78

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v78_BO] [4v78_BK] [4v78_AB] [4v78_BR] [4v78_AU] [4v78_AD] [4v78_BW] [4v78_BA] [4v78_AO] [4v78_AH] [4v78_AR] [4v78_BP] [4v78_BX] [4v78_BJ] [4v78_B2] [4v78_BZ] [4v78_AJ] [4v78_BV] [4v78_BN] [4v78_BS] [4v78_AF] [4v78_BH] [4v78_AC] [4v78_B5] [4v78_BD] [4v78_BT] [4v78_AS] [4v78_A3] [4v78_AK] [4v78_B0] [4v78_BC] [4v78_AM] [4v78_BL] [4v78_BG] [4v78_BF] [4v78_BE] [4v78_A2] [4v78_A1] [4v78_AQ] [4v78_BQ] [4v78_BY] [4v78_BI] [4v78_AL] [4v78_AT] [4v78_AI] [4v78_B3] [4v78_BU] [4v78_AE] [4v78_AP] [4v78] [4v78_AN] [4v78_AG] [4v78_BM] [4v78_B4] [4v78_BB] [4v78_AA] [4v78_B1] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4V78: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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