4V7S Ribosome Antibiotic date 0-0 20, 2000
authors J.A.Dunkle, L.Xiong, A.S.Mankin, J.H.D.Cate
compound source
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
210.759 433.272 618.863 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V7S supersedes 3OAQ, 3OAR, 3OAS, 3OAT
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO
  • mRNA binding involved in pos...


    • AS, CS


    AT, CT
  • ornithine decarboxylase inhi...


    • AU, CU


    B0, D0


    B1, D1


    B3, D3


    B4, D4


    BC, DC


    BE, DE


    BF, DF


    BL, DL


    BN, DN


    BO, DO


    BQ, DQ
  • translation repressor activi...


    • BS, DS


    BT, DT


    BW, DW


    BX, DX


    BY, DY


    CD, AD


    CE, AE


    CF, AF


    CG, AG


    CJ, AJ


    CK, AK


    CP, AP
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


    • CQ, AQ


    CR, AR


    D2, B2


    DD, BD


    DG, BG


    DH, BH


    DI, BI


    DJ, BJ


    DK, BK


    DM, BM


    DP, BP


    DR, BR


    DU, BU


    DV, BV


    DZ, BZ


    Primary referenceStructures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action., Dunkle JA, Xiong L, Mankin AS, Cate JH, Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17152-7. Epub 2010 Sep 27. PMID:20876128
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2131 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V7S
  • Structure Factors (10980 Kb)
  • Retrieve 4V7S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V7S from S2C, [Save to disk]
    • View 4V7S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V7S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v7s_BV] [4v7s_DV] [4v7s_DH] [4v7s_AE] [4v7s_CA] [4v7s_CL] [4v7s_BC] [4v7s_BG] [4v7s_AN] [4v7s_AJ] [4v7s_CG] [4v7s_DY] [4v7s_BR] [4v7s_D0] [4v7s_B2] [4v7s_CT] [4v7s_AB] [4v7s_CN] [4v7s_CB] [4v7s_AA] [4v7s_CQ] [4v7s_AH] [4v7s_AU] [4v7s_CC] [4v7s_D1] [4v7s_BJ] [4v7s_AF] [4v7s_AO] [4v7s_DP] [4v7s_BN] [4v7s] [4v7s_BU] [4v7s_DE] [4v7s_DX] [4v7s_BX] [4v7s_BM] [4v7s_BY] [4v7s_AM] [4v7s_BI] [4v7s_DB] [4v7s_DD] [4v7s_CK] [4v7s_DO] [4v7s_CH] [4v7s_DK] [4v7s_CP] [4v7s_DN] [4v7s_CJ] [4v7s_AS] [4v7s_AI] [4v7s_AR] [4v7s_D3] [4v7s_DC] [4v7s_AG] [4v7s_AP] [4v7s_BQ] [4v7s_D2] [4v7s_DL] [4v7s_DG] [4v7s_CU] [4v7s_CO] [4v7s_BH] [4v7s_BK] [4v7s_AD] [4v7s_AQ] [4v7s_DS] [4v7s_DQ] [4v7s_BS] [4v7s_BD] [4v7s_BW] [4v7s_DJ] [4v7s_CR] [4v7s_CM] [4v7s_DM] [4v7s_AK] [4v7s_DR] [4v7s_AT] [4v7s_DA] [4v7s_CE] [4v7s_BF] [4v7s_BP] [4v7s_DW] [4v7s_B4] [4v7s_DT] [4v7s_DI] [4v7s_AL] [4v7s_DU] [4v7s_BE] [4v7s_CS] [4v7s_CI] [4v7s_CD] [4v7s_DZ] [4v7s_BT] [4v7s_B1] [4v7s_BO] [4v7s_B0] [4v7s_DF] [4v7s_BZ] [4v7s_B3] [4v7s_BB] [4v7s_D4] [4v7s_BA] [4v7s_CF] [4v7s_AC] [4v7s_BL]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V7S: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 4V7S
  • Community annotation for 4V7S at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science