5AZX	Protein Transport	date	Oct 23, 2015
title	Crystal Structure Of P24delta1 Gold Domain (Native 1)
authors	M.Nagae, Y.Yamaguchi
compound		source
Molecule: Transmembrane Emp24 Domain-Containing Protein 10 Chain: A, B, C, D Fragment: Unp Residues 32-132 Synonym: 21 Kda Transmembrane-Trafficking Protein,Transmemb Protein Tmp21,P24 Family Protein Delta-1,P24delta1; Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Tmed10, Tmp21 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pcold
symmetry	Space Group: P 21 21 21	R_factor 0.230 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.232 74.392 79.890 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.58 Å
ligand	SO4	enzyme
Primary reference	3D Structure and Interaction of p24beta and p24delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport., Nagae M, Hirata T, Morita-Matsumoto K, Theiler R, Fujita M, Kinoshita T, Yamaguchi Y, J Mol Biol. 2016 Aug 25. pii: S0022-2836(16)30342-4. doi:, 10.1016/j.jmb.2016.08.023. PMID:27569046

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (5azx.pdb1.gz) 18 Kb Biological Unit Coordinates (5azx.pdb2.gz) 18 Kb Biological Unit Coordinates (5azx.pdb3.gz) 17 Kb Biological Unit Coordinates (5azx.pdb4.gz) 16 Kb LPC: Ligand-Protein Contacts for 5AZX CSU: Contacts of Structural Units for 5AZX Structure Factors (1134 Kb) Retrieve 5AZX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AZX from S2C, [Save to disk] Re-refined 5azx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AZX in 3D

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Visual 3D analysis of 5AZX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5azx_B] [5azx] [5azx_C] [5azx_D] [5azx_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5AZX

Community annotation for 5AZX at PDBWiki (http://pdbwiki.org)

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