5CLM	Hydrolase	date	Jul 16, 2015
title	1,4-Oxazine Bace1 Inhibitors
authors	F.Rombouts, G.Tresadern, O.Delgado, C.Martinez Lamenca, M.Van Go A.Garcia-Molina, S.Alonso De Diego, D.Oehlrich, H.Prokopcova, J.M.Alonso, N.Austin, H.Borghys, S.Van Brandt, M.Surkyn, M.De Cl A.Vos, R.Alexander, G.Macdonald, D.Moechars, A.Trabanco, H.Gijse
compound		source
Molecule: Beta-Secretase 1 Chain: A Fragment: Protease, Unp Residues 46-446 Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2; Ec: 3.4.23.46 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace1, Bace, Kiaa1149 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61 2 2	R_factor 0.190 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.824 100.824 170.104 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.61 Å
ligand	52K, CL, IOD	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	1,4-Oxazine beta-secretase (BACE1) inhibitors: from hit generation to orally bioavailable brain penetrant leads., Rombouts FJ, Tresadern G, Delgado O, Martinez Lamenca C, Van Gool M, Garcia-Molina A, Alonso De Diego SA, Oehlrich D, Prokopcova H, Alonso JM, Austin N, Borghys H, Van Brandt S, Surkyn M, De Cleyn M, Vos A, Alexander R, Macdonald GJ, Moechars D, Gijsen HJ, Trabanco AA, J Med Chem. 2015 Sep 17. PMID:26378740

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (5clm.pdb1.gz) 64 Kb LPC: Ligand-Protein Contacts for 5CLM CSU: Contacts of Structural Units for 5CLM Structure Factors (138 Kb) Retrieve 5CLM in mmCIF format [Save to disk] Re-refined 5clm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CLM in 3D

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Visual 3D analysis of 5CLM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5clm_A] [5clm] SWISS-PROT database: Domain organization of by SWISSPFAM

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