5GPN Electron Transport, Oxidoreductase date 6-0 20, 2000
authors J.Gu, M.Wu, R.Guo, M.Yang
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


4


5


6
  • cytochrome-c oxidase activit...


  • 7


    8


    9


    Ac


    Ae


    Ag


    Ak


    Al


    Am


    An


    C, O


    D, P


    E, Q


    F, R


    I, U


    J, L


    K, V
  • ubiquinol-cytochrome-c reduc...


  • M, A


    N, B


    S, G


    T, H


    W


    Y


    Z


    a


    b


    c


    d


    e


    f


    g


    h


    i


    j


    k, l


    m


    o


    p
  • NADH dehydrogenase activity


  • q, v


    r


    s


    t, Aa


    u, Ai


    w


    x


    y


    z
  • cytochrome-c oxidase activit...


  • Primary referenceThe architecture of the mammalian respirasome., Gu J, Wu M, Guo R, Yan K, Lei J, Gao N, Yang M, Nature. 2016 Sep 29;537(7622):639-43. doi: 10.1038/nature19359. PMID:27654917
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1237 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5GPN
  • Retrieve 5GPN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GPN from S2C, [Save to disk]
  • View 5GPN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GPN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gpn_i] [5gpn_Al] [5gpn_Aq] [5gpn_e] [5gpn_p] [5gpn_f] [5gpn_V] [5gpn_Av] [5gpn_b] [5gpn_q] [5gpn] [5gpn_O] [5gpn_P] [5gpn_Ar] [5gpn_6] [5gpn_Aa] [5gpn_Ak] [5gpn_2] [5gpn_W] [5gpn_v] [5gpn_n] [5gpn_B] [5gpn_Ac] [5gpn_Ad] [5gpn_At] [5gpn_Aj] [5gpn_Y] [5gpn_Ai] [5gpn_N] [5gpn_8] [5gpn_j] [5gpn_J] [5gpn_Ab] [5gpn_L] [5gpn_H] [5gpn_Ah] [5gpn_Z] [5gpn_I] [5gpn_U] [5gpn_u] [5gpn_c] [5gpn_Ag] [5gpn_Au] [5gpn_Af] [5gpn_Q] [5gpn_m] [5gpn_o] [5gpn_1] [5gpn_4] [5gpn_M] [5gpn_w] [5gpn_9] [5gpn_D] [5gpn_g] [5gpn_K] [5gpn_Ae] [5gpn_E] [5gpn_Aw] [5gpn_y] [5gpn_z] [5gpn_h] [5gpn_F] [5gpn_Ao] [5gpn_An] [5gpn_x] [5gpn_As] [5gpn_R] [5gpn_3] [5gpn_s] [5gpn_5] [5gpn_Ap] [5gpn_Am] [5gpn_T] [5gpn_d] [5gpn_l] [5gpn_7] [5gpn_S] [5gpn_a] [5gpn_G] [5gpn_0] [5gpn_t] [5gpn_C] [5gpn_r] [5gpn_A] [5gpn_k]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GPN
  • Community annotation for 5GPN at PDBWiki (http://pdbwiki.org)

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