5GZ7 Hydrolase date Sep 26, 2016
title Crystal Structure Of The Complex Of Ribosome Inactivating Pr 1,2-Ethanediol At 1.95 Angstrom Resolution
authors P.Tiwari, S.N.Pandey, P.Kaur, S.Sharma, T.P.Singh
compound source
Molecule: Ribosome Inactivating Protein
Chain: A
Ec: 3.2.2.22
 Organism_scientific: Momordica Balsamina
Organism_common: Bitter Gourd
Organism_taxid: 3672
symmetry Space Group: H 3
R_factor 0.156 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.197 130.197 40.656 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand EDO, GOL, NAG enzyme Hydrolase E.C.3.2.2.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5gz7.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5GZ7
  • CSU: Contacts of Structural Units for 5GZ7
  • Structure Factors (478 Kb)
  • Retrieve 5GZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GZ7 from S2C, [Save to disk]
  • Re-refined 5gz7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GZ7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gz7_A] [5gz7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GZ7
  • Community annotation for 5GZ7 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science