5JUO
Ribosome
date
6-0 20, 1999
authors
P.Abeyrathne, C.S.Koh, T.Grant, N.Grigorieff, A.A.Korostelev
compound
source
symmetry
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
Gene
Ontology
Chain
Function
Process
Component
AA
cytosolic large ribosomal su...
AB
cytosolic small ribosomal su...
AC
cytosolic small ribosomal su...
BA
cytosolic large ribosomal su...
BB
cytosolic small ribosomal su...
BC
CA
cytosolic large ribosomal su...
CB
cytosolic small ribosomal su...
CC
cytosolic small ribosomal su...
DA
DB
cytosolic small ribosomal su...
DC
E
cytosolic large ribosomal su...
EA
cytosolic large ribosomal su...
EB
F
FA
cytosolic large ribosomal su...
FB
cytosolic small ribosomal su...
G
cytosolic large ribosomal su...
GA
GB
cytosolic small ribosomal su...
H
cytosolic large ribosomal su...
HA
cytosolic large ribosomal su...
HB
I
cytosolic large ribosomal su...
IA
IB
cytosolic small ribosomal su...
J
JA
cytosolic large ribosomal su...
JB
cytosolic small ribosomal su...
K
KA
KB
cytosolic small ribosomal su...
L
cytosolic large ribosomal su...
LA
preribosome, large subunit p...
LB
M
MA
cytosolic large ribosomal su...
MB
N
cytosolic large ribosomal su...
NA
NB
O
cytosolic large ribosomal su...
OA
cytosolic large ribosomal su...
OB
P
cytosolic large ribosomal su...
PA
cytosolic large ribosomal su...
PB
Q
cytosolic large ribosomal su...
QA
cytosolic large ribosomal su...
QB
cytosolic small ribosomal su...
R
cytosolic large ribosomal su...
RA
cytosolic large ribosomal su...
RB
cytosolic small ribosomal su...
S
SA
SB
cytosolic small ribosomal su...
T
cytosolic large ribosomal su...
TA
cytosolic large ribosomal su...
TB
cytosolic small ribosomal su...
U
UA
cytosolic large ribosomal su...
UB
V
cytosolic large ribosomal su...
VA
VB
W
cytosolic large ribosomal su...
WA
GDP-dissociation inhibitor a...
WB
cytosolic small ribosomal su...
X
cytosolic large ribosomal su...
XA
XB
Y
cytosolic large ribosomal su...
YA
YB
cytosolic small ribosomal su...
Z
ZA
ZB
cytosolic small ribosomal su...
Primary reference
Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome., Abeyrathne PD, Koh CS, Grant T, Grigorieff N, Korostelev AA, Elife. 2016 May 9;5. pii: e14874. doi: 10.7554/eLife.14874. PMID:
27159452
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(729 Kb)
[Save to disk]
CSU:
Contacts of Structural Units
for 5JUO
Retrieve 5JUO in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5JUO
from
S2C
,
[Save to disk]
View 5JUO in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5JUO
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5juo_YA]
[5juo_P]
[5juo_HA]
[5juo_H]
[5juo_GA]
[5juo_GB]
[5juo_BB]
[5juo_EA]
[5juo_R]
[5juo_M]
[5juo_S]
[5juo_IB]
[5juo_TB]
[5juo_F]
[5juo_A]
[5juo_WA]
[5juo_PA]
[5juo_DB]
[5juo_BC]
[5juo_EB]
[5juo]
[5juo_AB]
[5juo_LA]
[5juo_AA]
[5juo_B]
[5juo_SB]
[5juo_W]
[5juo_T]
[5juo_I]
[5juo_ZA]
[5juo_JA]
[5juo_U]
[5juo_OB]
[5juo_VB]
[5juo_O]
[5juo_QA]
[5juo_TA]
[5juo_CB]
[5juo_AC]
[5juo_CA]
[5juo_DA]
[5juo_WB]
[5juo_Q]
[5juo_SA]
[5juo_K]
[5juo_YB]
[5juo_IA]
[5juo_C]
[5juo_DC]
[5juo_JB]
[5juo_MB]
[5juo_OA]
[5juo_MA]
[5juo_L]
[5juo_NB]
[5juo_V]
[5juo_UA]
[5juo_Y]
[5juo_ZB]
[5juo_RA]
[5juo_CC]
[5juo_BA]
[5juo_LB]
[5juo_EC]
[5juo_FB]
[5juo_FA]
[5juo_G]
[5juo_X]
[5juo_XA]
[5juo_HB]
[5juo_UB]
[5juo_N]
[5juo_VA]
[5juo_XB]
[5juo_D]
[5juo_KA]
[5juo_QB]
[5juo_Z]
[5juo_KB]
[5juo_PB]
[5juo_E]
[5juo_J]
[5juo_NA]
[5juo_RB]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domains
found in 5JUO:
[EFG_C]
[EFG_IV]
[KH]
[KOW]
[RL11]
[Ribosomal_L14]
[Ribosomal_L15e]
[Ribosomal_L19e]
[Ribosomal_L2]
[Ribosomal_L2_C]
[Ribosomal_L31e]
[Ribosomal_L32e]
[Ribosomal_L40e]
[Ribosomal_S10]
[Ribosomal_S13_N]
[Ribosomal_S15]
[Ribosomal_S19e]
[Ribosomal_S27]
[Ribosomal_S3Ae]
[Ribosomal_S4]
[Ribosomal_S6e]
[S4]
[UBQ]
[WD40 ]
by
SMART
Other resources with information on 5JUO
Community annotation for
5JUO
at
PDBWiki
(http://pdbwiki.org)
You may enter another PDB ID code
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