5LOP	Rna Binding Protein	date	Aug 09, 2016
title	Structure Of The Active Form Of K. Lactis Dcp1-Dcp2-Edc3 D Complex Bound To M7gdp
authors	C.Charenton, V.Taverniti, C.Gaudon-Plesse, R.Back, B.Seraphin, M.
compound		source
Molecule: Klla0f23980p Chain: A Engineered: Yes		Organism_scientific: Kluyveromyces Lactis Nrrl Y-1140 Organism_common: Yeast Organism_taxid: 284590 Gene: Klla0_f23980g Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Codon+
Molecule: Klla0e01827p Chain: B Engineered: Yes		Organism_scientific: Kluyveromyces Lactis Nrrl Y-1140 Organism_common: Yeast Organism_taxid: 284590 Gene: Klla0_e01827g Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Codon+
Molecule: Klla0a11308p Chain: C Engineered: Yes		Organism_scientific: Kluyveromyces Lactis Nrrl Y-1140 Organism_common: Yeast Organism_taxid: 284590 Gene: Klla0_a11308g Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Codon+
symmetry	Space Group: P 64 2 2	R_factor 0.200 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 219.810 219.810 74.190 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	M7G, MG	enzyme
Gene	KLLA0 ; KLLA0 ; KLLA0
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure of the active form of Dcp1-Dcp2 decapping enzyme bound to m7GDP and its Edc3 activator., Charenton C, Taverniti V, Gaudon-Plesse C, Back R, Seraphin B, Graille M, Nat Struct Mol Biol. 2016 Oct 3. doi: 10.1038/nsmb.3300. PMID:27694841

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (5lop.pdb1.gz) 177 Kb LPC: Ligand-Protein Contacts for 5LOP CSU: Contacts of Structural Units for 5LOP Structure Factors (342 Kb) Retrieve 5LOP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LOP from S2C, [Save to disk] Re-refined 5lop structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LOP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LOP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lop_B] [5lop_C] [5lop_A] [5lop] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5LOP: [DCP2 ] by SMART

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