5N7G Signaling Protein date Feb 20, 2017
title Magi-1 Complexed With A Synthetic Prsk1 Peptide
authors G.Gogl, L.Nyitray
compound source
Molecule: Membrane-Associated Guanylate Kinase, Ww And Pdz Containing Protein 1,Annexin A2;
Chain: A, B
Synonym: Atrophin-1-Interacting Protein 3,Aip-3,Bai1-Associ Protein 1,Bap-1,Membrane-Associated Guanylate Kinase Invert 1,Trinucleotide Repeat-Containing Gene 19 Protein,Ww Domain Containing Protein 3,Wwp3,Annexin II,Annexin-2,Calpactin I Chain,Calpactin-1 Heavy Chain,Chromobindin-8,Lipocortin II, Anticoagulant Protein Iv,Pap-Iv,Protein I,P36;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Magi1, Aip3, Baiap1, Bap1, Tnrc19, Anxa2, Anx2, Anx2l Lpc2d;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ribosomal Protein S6 Kinase Alpha-1
Chain: C
Fragment: Unp Residues 88-94
Synonym: S6k-Alpha-1,90 Kda Ribosomal Protein S6 Kinase 1,P Kinase-Activated Protein Kinase 1a,Mapkapk-1a,Ribosomal S6 Rsk-1;
Ec: 2.7.11.1
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
194.930 60.230 99.350 90.00 98.69 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand CA, GOL, SEP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • phospholipase inhibitor acti...
  • serine-type endopeptidase in...
  • calcium channel activity
  • phospholipase A2 inhibitor a...
  • cadherin binding involved in...


  • Primary referenceDynamic control of RSK complexes by phosphoswitch-based regulation., Gogl G, Biri-Kovacs B, Poti AL, Vadaszi H, Szeder B, Bodor A, Schlosser G, Acs A, Turiak L, Buday L, Alexa A, Nyitray L, Remenyi A, FEBS J. 2017 Oct 30. doi: 10.1111/febs.14311. PMID:29083550
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (5n7g.pdb1.gz) 142 Kb
  • Biological Unit Coordinates (5n7g.pdb2.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 5N7G
  • CSU: Contacts of Structural Units for 5N7G
  • Structure Factors (420 Kb)
  • Retrieve 5N7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N7G from S2C, [Save to disk]
  • View 5N7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N7G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n7g_C] [5n7g_A] [5n7g_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N7G
  • Community annotation for 5N7G at PDBWiki (http://pdbwiki.org)

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