OCA Atlas for 5T2A

5T2A

Ribosome

date

6-0 20, 1998

authors

X.Zhang, M.Lai, Z.H.Zhou

compound

source

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
0
1
3
4
5
6
7, AD
8
AC
AE
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AV
AW
AX
AY
AZ
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
X
Y
Z
a
b
c
d
e
f
g
h
i
j
k
l
m
n
o
p
q
r
s
t
u
v
w

Primary reference

Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes., Zhang X, Lai M, Chang W, Yu I, Ding K, Mrazek J, Ng HL, Yang OO, Maslov DA, Zhou ZH, Nat Commun. 2016 Oct 18;7:13223. doi: 10.1038/ncomms13223. PMID:27752045

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1962 Kb) [Save to disk]

CSU: Contacts of Structural Units for 5T2A

Retrieve 5T2A in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5T2A from S2C, [Save to disk]

View 5T2A in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5T2A

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5t2a_M] [5t2a_N] [5t2a_AW] [5t2a_b] [5t2a_AM] [5t2a_g] [5t2a_U] [5t2a_0] [5t2a_R] [5t2a_8] [5t2a_d] [5t2a_AR] [5t2a_s] [5t2a_AX] [5t2a_K] [5t2a_v] [5t2a_H] [5t2a_AP] [5t2a_X] [5t2a_AN] [5t2a_AY] [5t2a_j] [5t2a_k] [5t2a_F] [5t2a_7] [5t2a_Q] [5t2a_Y] [5t2a_u] [5t2a_f] [5t2a_T] [5t2a_l] [5t2a_3] [5t2a_L] [5t2a_A] [5t2a_r] [5t2a_O] [5t2a_a] [5t2a_J] [5t2a_V] [5t2a_B] [5t2a_4] [5t2a_AH] [5t2a_AJ] [5t2a_2] [5t2a_G] [5t2a_5] [5t2a_AL] [5t2a_AG] [5t2a_P] [5t2a_AT] [5t2a_q] [5t2a_h] [5t2a_i] [5t2a_c] [5t2a_E] [5t2a_AI] [5t2a_AQ] [5t2a_AC] [5t2a_AE] [5t2a_n] [5t2a_AO] [5t2a_AV] [5t2a] [5t2a_I] [5t2a_AD] [5t2a_t] [5t2a_AK] [5t2a_C] [5t2a_S] [5t2a_e] [5t2a_1] [5t2a_D] [5t2a_o] [5t2a_w] [5t2a_p] [5t2a_AS] [5t2a_Z] [5t2a_m] [5t2a_W] [5t2a_6] [5t2a_AZ]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5T2A

Community annotation for 5T2A at PDBWiki (http://pdbwiki.org)

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