5T62	Ribosome	date	6-0 20, 2000
authors	A.G.Malyutin, S.Musalgaonkar, S.Patchett, J.Frank, A.W.Johns
compound		source
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 403.200 403.200 403.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component D E cytosolic large ribosomal su... F cytosolic large ribosomal su... G cytosolic large ribosomal su... H I J cytosolic large ribosomal su... K L cytosolic large ribosomal su... M cytosolic large ribosomal su... N cytosolic large ribosomal su... O cytosolic large ribosomal su... Q cytosolic large ribosomal su... R cytosolic large ribosomal su... V W X a b cytosolic large ribosomal su... c d cytosolic large ribosomal su... e cytosolic large ribosomal su... f cytosolic large ribosomal su... g cytosolic large ribosomal su... h i cytosolic large ribosomal su... j cytosolic large ribosomal su... k cytosolic large ribosomal su... l m cytosolic large ribosomal su... n cytosolic large ribosomal su... o p cytosolic large ribosomal su... q r cytosolic large ribosomal su... s t preribosome, large subunit p... u cytosolic large ribosomal su... v w cytosolic large ribosomal su... x cytosolic large ribosomal su... y cytosolic large ribosomal su... z cytosolic large ribosomal su...
Primary reference	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis., Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW, EMBO J. 2017 Feb 8. pii: e201696012. doi: 10.15252/embj.201696012. PMID:28179369

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1957 Kb) [Save to disk] CSU: Contacts of Structural Units for 5T62 Retrieve 5T62 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5T62 from S2C, [Save to disk]

View 5T62 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5T62

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5t62_p] [5t62_J] [5t62_r] [5t62_W] [5t62_E] [5t62_L] [5t62_a] [5t62_t] [5t62_M] [5t62_d] [5t62_v] [5t62_z] [5t62_N] [5t62_G] [5t62_H] [5t62_e] [5t62_w] [5t62_j] [5t62_k] [5t62_X] [5t62_b] [5t62_h] [5t62_i] [5t62_D] [5t62_y] [5t62_K] [5t62_B] [5t62_V] [5t62_x] [5t62_f] [5t62_c] [5t62_s] [5t62_g] [5t62_n] [5t62_R] [5t62_F] [5t62_A] [5t62_o] [5t62_Q] [5t62_m] [5t62_I] [5t62] [5t62_S] [5t62_q] [5t62_O] [5t62_u] [5t62_l] [5t62_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5T62

Community annotation for 5T62 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---