5VGZ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


D


U
  • enzyme regulator activity


    • V
  • enzyme regulator activity


    • W


    X


    Y
  • enzyme regulator activity


    • Z


    a


    c
  • endopeptidase activator acti...


    • d


    e


    Primary referenceConformational Landscape of the p28-Bound Human Proteasome Regulatory Particle., Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y, Mol Cell. 2017 Jul 20;67(2):322-333.e6. doi: 10.1016/j.molcel.2017.06.007. Epub, 2017 Jul 6. PMID:28689658
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] () [Save to disk]
  • LPC: Ligand-Protein Contacts for 5VGZ
  • CSU: Contacts of Structural Units for 5VGZ
  • Retrieve 5VGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VGZ from S2C, [Save to disk]
    • View 5VGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VGZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vgz_E] [5vgz_F] [5vgz_e] [5vgz_c] [5vgz_C] [5vgz_Z] [5vgz_d] [5vgz_a] [5vgz_X] [5vgz_U] [5vgz_D] [5vgz_Y] [5vgz_b] [5vgz_A] [5vgz_B] [5vgz_W] [5vgz_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VGZ
  • Community annotation for 5VGZ at PDBWiki (http://pdbwiki.org)

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