5Y15 Hydrolase date Jul 19, 2017
title Crystal Structure Of Human Dusp28
authors B.Ku, W.Hong, S.J.Kim, S.E.Ryu
compound source
Molecule: Dual Specificity Phosphatase 28
Chain: A, B
Ec: 3.1.3.16,3.1.3.48
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dusp28
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.219 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.952 78.952 90.258 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand PO4 enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein tyrosine phosphatase...


    • Primary referenceStructural and biochemical analysis of atypically low dephosphorylating activity of human dual-specificity phosphatase 28., Ku B, Hong W, Keum CW, Kim M, Ryu H, Jeon D, Shin HC, Kim JH, Kim SJ, Ryu SE, PLoS One. 2017 Nov 9;12(11):e0187701. doi: 10.1371/journal.pone.0187701., eCollection 2017. PMID:29121083
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5y15.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5Y15
  • CSU: Contacts of Structural Units for 5Y15
  • Structure Factors (137 Kb)
  • Retrieve 5Y15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y15 from S2C, [Save to disk]
    • View 5Y15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y15
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y15_A] [5y15_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y15
  • Community annotation for 5Y15 at PDBWiki (http://pdbwiki.org)

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