5Y2Z	Cell Adhesion	date	Jul 27, 2017
title	Crystal Structure Of Human Lgi1 Eptp-Adam22 Complex
authors	A.Yamagata, S.Fukai
compound		source
Molecule: Disintegrin And Metalloproteinase Domain-Containi 22; Chain: A, C, E, G, I, K Fragment: Unp Residues 233-729 Synonym: Adam 22,Metalloproteinase-Disintegrin Adam22-3, Metalloproteinase-Like,Disintegrin-Like,And Cysteine-Rich P Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adam22, Mdc2 Expression_system: Mammalia Expression_system_taxid: 40674
Molecule: Leucine-Rich Glioma-Inactivated Protein 1 Chain: B, D, F, H, J, L Fragment: Unp Residues 224-557 Synonym: Epitempin-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lgi1, Ept, Unq775pro1569 Expression_system: Mammalia Expression_system_taxid: 40674
symmetry	Space Group: P 1	R_factor 0.244 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.579 83.608 293.543 86.40 88.17 59.95
method	X-Ray Diffraction	resolution	2.67 Å
ligand	BMA, CA, FUC, NAG	enzyme
Gene Ontology	Chain Function Process Component A, C, K, I, G, E
Primary reference	Structural basis of epilepsy-related ligand-receptor complex LGI1-ADAM22., Yamagata A, Miyazaki Y, Yokoi N, Shigematsu H, Sato Y, Goto-Ito S, Maeda A, Goto T, Sanbo M, Hirabayashi M, Shirouzu M, Fukata Y, Fukata M, Fukai S, Nat Commun. 2018 Apr 18;9(1):1546. doi: 10.1038/s41467-018-03947-w. PMID:29670100

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1618 Kb) [Save to disk] Biological Unit Coordinates (5y2z.pdb1.gz) 278 Kb Biological Unit Coordinates (5y2z.pdb2.gz) 277 Kb Biological Unit Coordinates (5y2z.pdb3.gz) 274 Kb Biological Unit Coordinates (5y2z.pdb4.gz) 272 Kb Biological Unit Coordinates (5y2z.pdb5.gz) 280 Kb Biological Unit Coordinates (5y2z.pdb6.gz) 281 Kb LPC: Ligand-Protein Contacts for 5Y2Z CSU: Contacts of Structural Units for 5Y2Z Structure Factors (1876 Kb) Retrieve 5Y2Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5Y2Z from S2C, [Save to disk]

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Visual 3D analysis of 5Y2Z

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5y2z_H] [5y2z_I] [5y2z_F] [5y2z_K] [5y2z_C] [5y2z_J] [5y2z_A] [5y2z_B] [5y2z_G] [5y2z_L] [5y2z_D] [5y2z_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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