5ZK8 Membrane Protein Inhibitor date Mar 23, 2018
title Crystal Structure Of M2 Muscarinic Acetylcholine Receptor Bo Nms
authors R.Suno, S.Maeda, S.Yasuda, K.Yamashita, K.Hirata, S.Horita, M.S.Ta H.Tsujimoto, T.Murata, M.Kinoshita, M.Yamamoto, B.K.Kobilka, S.I T.Kobayashi
compound source
Molecule: Muscarinic Acetylcholine Receptor M2,Redesigned A Cytochrome B562,Muscarinic Acetylcholine Receptor M2;
Chain: A
Fragment: Unp Residues 10-217,Unp Residues 377-466
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chrm2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.231 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.280 59.210 88.960 90.00 98.54 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 3C0 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the subtype-selective antagonist binding to the M2 muscarinic receptor., Suno R, Lee S, Maeda S, Yasuda S, Yamashita K, Hirata K, Horita S, Tawaramoto MS, Tsujimoto H, Murata T, Kinoshita M, Yamamoto M, Kobilka BK, Vaidehi N, Iwata S, Kobayashi T, Nat Chem Biol. 2018 Dec;14(12):1150-1158. doi: 10.1038/s41589-018-0152-y. Epub, 2018 Nov 12. PMID:30420692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (5zk8.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 5ZK8
  • CSU: Contacts of Structural Units for 5ZK8
  • Structure Factors (206 Kb)
  • Retrieve 5ZK8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZK8 from S2C, [Save to disk]
    • View 5ZK8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ZK8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zk8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZK8
  • Community annotation for 5ZK8 at PDBWiki (http://pdbwiki.org)

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