6A5Z Transcription date Jun 25, 2018
title Crystal Structure Of Human Fxrrxr-Lbd Heterodimer Bound To 9cra And Src1
authors N.Wang, J.Liu
compound source
Molecule: Bile Acid Receptor
Chain: A, H
Fragment: Ligand Binding Domain
Synonym: Farnesoid X-Activated Receptor,Farnesol Receptor H Nuclear Receptor Subfamily 1 Group H Member 4,Retinoid X Re Interacting Protein 14,Rxr-Interacting Protein 14;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr1h4, Bar, Fxr, Hrr1, Rip14
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)

Molecule: Retinoic Acid Receptor Rxr-Alpha
Chain: D, L
Fragment: Ligand Binding Domain
Synonym: Nuclear Receptor Subfamily 2 Group B Member 1,Reti Receptor Alpha;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rxra, Nr2b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)

Molecule: Nuclear Receptor Coactivator 1
Chain: E, F, G, I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.530 96.130 114.240 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand 9CR, 9R3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, L


H, A


Primary referenceLigand binding and heterodimerization with retinoid X receptor alpha (RXRalpha) induce farnesoid X receptor (FXR) conformational changes affecting co-activator binding., Wang N, Zou Q, Xu J, Zhang J, Liu J, J Biol Chem. 2018 Oct 1. pii: RA118.004652. doi: 10.1074/jbc.RA118.004652. PMID:30275017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (6a5z.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (6a5z.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 6A5Z
  • CSU: Contacts of Structural Units for 6A5Z
  • Structure Factors (851 Kb)
  • Retrieve 6A5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A5Z from S2C, [Save to disk]
  • View 6A5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A5Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a5z_D] [6a5z_H] [6a5z_L] [6a5z_A] [6a5z_E] [6a5z_F] [6a5z_G] [6a5z_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A5Z
  • Community annotation for 6A5Z at PDBWiki (http://pdbwiki.org)

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